Gene Information

Name : Pecwa_1766 (Pecwa_1766)
Accession : YP_003259159.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1908654 - 1909931 bp
Length : 1278 bp
Strand : -
Note : PFAM: integrase; KEGG: dda:Dd703_2459 integrase

DNA sequence : 
ATGTCACTTACTGATACTAAAGTAAAAAATGCCAAGCCGTCAGAAAAGGTGGTTAAGCTCACTGACGGGTTCGGCCTCTA
CCTGTTGGTGCATCCCAACGGTTCCAAATACTGGCAGTTAGGCTACCGCTTCGAAGGGAAACAGAAGGTGTTTTCGATCG
GCGTCTACCCTGCTGTTTCACTGGCTGATGCAAGACAACGCCGGGATGACGCCAAAAAGCTGTTGGCTGCTGGCATTGAT
CCGAGCGCCAAAAAACGGGCTGACAACAAGTCCGTTCAAGAAAAGCGGAACAATACCCGCGCTTTCAAAACCGTTGCCAA
AAGCTGGTTTGCCACCAAAACCACATGGTCGGAAGATTATCAGCGTTCTGTATGGACCCGACTGGAAACCTATCTGTTCC
CTGATATTGGCAACAAAGATATTGCTGAACTGGATACAGGCGATCTGCTGGTTCCCATCAAAAAGATAGAAAAGCTGGGT
TATCTGGAAATTGCCATGCGGGTAAAACAGTACGCAACCGCCATCATGCGTTACGCCGTTCAGCAAAAGATGATCCGTTT
CAATCCTGCCTATGATTTGGAAGGGGCAGTTCAGAAGCCACAGACGGAACACCGCCCCGCTATCGAACTGGAAGAGATTC
CTACCCTACTGGAACGTATTGACGGCTATCAGGGCCGTAGCAGACTTACCCAATTGGCAATAAAGCTCAATCTGCTGATT
TTTGTCCGTTCCAGTGAACTCCGCTTTGCCCGTTGGTCAGAGATCGATTTCAAAAGCGCTTTGTGGGTCATCCCTGAACA
GCGTGAAGCCATAAAAGGGATCAAGCATTCAGGCCGTGGTGCCAAAATGCACAGGAAACATTATGTTCCTCTATGCGATC
AAGCGCTGGCAATTTTGGAAGAGCTTAAAGACCTCACCTATGACGTTAACGGTGACGACGGCTTTATCCTGACTGGCTGT
TATGATGCGATGAAGCCGATGAGTGAAAACACCATCAACAAGGCACTGCGCAAAATGGGCTATGACACCAAAACCGATCT
GTGCGGTCATGGTTTCCGAACGCTGGCGTGTAGTGCGTTAATCGAATCAGGTATCTGGCCTGAAGATGTGGTTGAACTTC
AGATGAGCCACATGGAAAAGAACAACGTTCGTGCCGCCTACACTCACAAGGCCAAACATCTTGAACAGCGTCGTCTGATG
TTGCAATGGTGGGCTGATTTTCTGGATGCTAACAGCAACGGTATGGTGAGGCCGTTTGAGTTTTCCAATCGGTCATAG

Protein sequence : 
MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHPNGSKYWQLGYRFEGKQKVFSIGVYPAVSLADARQRRDDAKKLLAAGID
PSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLG
YLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIDGYQGRSRLTQLAIKLNLLI
FVRSSELRFARWSEIDFKSALWVIPEQREAIKGIKHSGRGAKMHRKHYVPLCDQALAILEELKDLTYDVNGDDGFILTGC
YDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLM
LQWWADFLDANSNGMVRPFEFSNRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-115 59
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-110 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-110 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-113 55
int AAK00456.1 Int Not tested SHI-1 Protein 3e-107 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-115 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-115 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 7e-115 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-115 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 9e-115 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 3e-113 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-115 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-115 55
int CAC81896.1 integrase Not tested LEE II Protein 4e-107 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-115 55
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-114 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-115 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-115 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 7e-115 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-115 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 7e-115 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-114 54
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-114 54
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-113 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-103 52
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-103 52
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-98 50
int CAA08754.1 integrase Not tested HPI Protein 1e-94 49
int YP_002346908.1 integrase Not tested HPI Protein 3e-94 49
int CAB59974.1 integrase Not tested HPI Protein 8e-95 49
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-94 49
int2 NP_993013.1 integrase Not tested HPI Protein 3e-94 49
int CAA21384.1 - Not tested HPI Protein 3e-94 49
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 5e-66 48
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 8e-78 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 9e-94 48
unnamed AAD17660.1 unknown Not tested HPI Protein 7e-91 47
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-72 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-69 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-69 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-69 41
int ACU09430.1 integrase Not tested LEE Protein 5e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_1766 YP_003259159.1 integrase VFG1536 Protein 1e-115 59
Pecwa_1766 YP_003259159.1 integrase VFG0626 Protein 2e-115 55
Pecwa_1766 YP_003259159.1 integrase VFG1693 Protein 2e-114 54
Pecwa_1766 YP_003259159.1 integrase VFG0783 Protein 3e-69 41