|
Name : Pecwa_1693 (Pecwa_1693) Accession : YP_003259087.1 Strain : Pectobacterium wasabiae WPP163 Genome accession: NC_013421 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 1844711 - 1845982 bp Length : 1272 bp Strand : - Note : PFAM: integrase; KEGG: dze:Dd1591_1514 integrase DNA sequence : ATGTCTCTTAACGACTCAAAAATCCGCAAATTAAAACCATCAGCAAAATCCTTCAAAGTTTCCGATTCTCACGGTCTGTA CCTGCTGGTTAATTCAAGCGGTTCACGTCTCTGGTATCTCAAATATCGCATCAATAGAAAAGAATCACGCCTCGGCTTAG GTGCCTACCCTGATGTATCTCTGGCCGACGCTCGTCAGCAGCGTGACGGTATCCGCAAATTGCTAGCGCAGAATATCAAC CCCGCACAGCAGCGCTCTGCTGAAAGAACCACTTCCTCACCAGAGAAAACCTTCAAGCATGTGGCATTGGAGTGGCATAA AAGCAACCGCTCATGGTCAGAGAACCATGCCGCCCGTCTGCTCGCCAGCATGAATAACCATATCTTCCCGATAATTGGAC ATCTGCCGGTCACAGAACTGAAAACTCGCCACTTCATCGATCTGCTGAAAGGTATTGAGAAAAAAGGTCTGCTGGAAGTA ACGGCACGAACCCGACAGCATATGTGCAACATCATGCGTCATGCCGTACATCAGGAATTAATAGAGAACAATCCGGCGGC AAATTTGGATGGCATTATCGCCCCTCCCGTTAAACGTCACTACCCTGCCCTTCCGCTGGAGCGACTGCCGGAGCTGTTGG CTAGCATTGAGGACTACAAGCAAGGGCGAGAATTAACCCGTTTGGCAGTATCACTTACTCTGCACCTGTTCATCCGTTCC AGCGAACTACGTTTCGCCCGTTGGTCTGAGATCAATTTTAGAAACAAAATCTGGACCATTCCGGCTACCCGTGAATCCAT TCCTGGTGTGCGTTATTCCGGGCGTGGTGCCAAAATGCGCACGCCACATATCGTCCCCCTCTCTCGTCAGTCCATCGCTA TTCTGAAACAGATACGGGATATCTCTGGGCATCAGGAACTGATATTCCCCGGTGACCATAATCCGTATAAACCCATGTGC GAAAACACGGTGAATAAAGCTCTGCGCTTGATGGGTTATGACACGAAAGATGAAGTTTGCGGCCACGGATTTCGGACAAT GGCCTGTAGCGCCCTAATGGAGTCTGGCGTGTGGCCGCAGGATGCAGTTGAAAGGCAGATGAGCCATCAGGAACGCAACA GCGTTCGAGCGGCTTACATCCATAAAGCAGAATATCTCGATGCACGTAAAGCGATGATGCAATGGTGGTCGGATTATCTG GATACCAACCGAGAAGGATATATTGCGCCATACATTTATGCGCAACAACATAAGACGGCTGGAGCTGCCTGA Protein sequence : MSLNDSKIRKLKPSAKSFKVSDSHGLYLLVNSSGSRLWYLKYRINRKESRLGLGAYPDVSLADARQQRDGIRKLLAQNIN PAQQRSAERTTSSPEKTFKHVALEWHKSNRSWSENHAARLLASMNNHIFPIIGHLPVTELKTRHFIDLLKGIEKKGLLEV TARTRQHMCNIMRHAVHQELIENNPAANLDGIIAPPVKRHYPALPLERLPELLASIEDYKQGRELTRLAVSLTLHLFIRS SELRFARWSEINFRNKIWTIPATRESIPGVRYSGRGAKMRTPHIVPLSRQSIAILKQIRDISGHQELIFPGDHNPYKPMC ENTVNKALRLMGYDTKDEVCGHGFRTMACSALMESGVWPQDAVERQMSHQERNSVRAAYIHKAEYLDARKAMMQWWSDYL DTNREGYIAPYIYAQQHKTAGAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| APECO1_1051 | YP_853069.1 | phage integrase | Not tested | PAI IV APEC-O1 | Protein | 3e-114 | 79 |
| int | CAA08754.1 | integrase | Not tested | HPI | Protein | 6e-154 | 78 |
| int | CAB59974.1 | integrase | Not tested | HPI | Protein | 3e-154 | 78 |
| int | YP_002346908.1 | integrase | Not tested | HPI | Protein | 2e-153 | 78 |
| y2393 | NP_669700.1 | prophage integrase | Not tested | HPI | Protein | 2e-153 | 78 |
| int2 | NP_993013.1 | integrase | Not tested | HPI | Protein | 2e-153 | 78 |
| int | CAA21384.1 | - | Not tested | HPI | Protein | 2e-153 | 78 |
| intB | AAD37509.1 | P4-like integrase | Not tested | PAI IV 536 | Protein | 3e-122 | 78 |
| unnamed | AAD17660.1 | unknown | Not tested | HPI | Protein | 3e-150 | 76 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 3e-115 | 59 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 3e-115 | 59 |
| int | NP_458759.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 2e-119 | 58 |
| int | NP_807963.1 | bacteriophage integrase | Not tested | SPI-7 | Protein | 2e-119 | 58 |
| intB | CAD42017.1 | bacteriophage P4 integrase | Not tested | PAI II 536 | Protein | 4e-105 | 57 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 3e-109 | 53 |
| c5216 | NP_757064.1 | prophage P4 integrase | Not tested | PAI II CFT073 | Protein | 5e-109 | 53 |
| S4822 | NP_838459.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-109 | 53 |
| ORF_1 | AAZ04412.1 | phage integrase | Not tested | PAI I APEC-O1 | Protein | 8e-109 | 53 |
| SF2964 | NP_708738.1 | P4-type integrase | Not tested | SHI-1 | Protein | 2e-109 | 53 |
| APECO1_3534 | YP_854214.1 | P4-like integrase | Not tested | PAI I APEC-O1 | Protein | 1e-108 | 53 |
| int | AAK00456.1 | Int | Not tested | SHI-1 | Protein | 8e-102 | 53 |
| int-phe | AAL60261.1 | Int-phe | Not tested | LEE | Protein | 1e-109 | 53 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 5e-109 | 53 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 2e-110 | 53 |
| int | CAC81896.1 | integrase | Not tested | LEE II | Protein | 4e-102 | 53 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 2e-110 | 53 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 1e-110 | 53 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 2e-109 | 53 |
| ECO103_3550 | YP_003223418.1 | integrase | Not tested | LEE | Protein | 2e-109 | 53 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 3e-108 | 53 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 2e-109 | 53 |
| ECO26_5300 | YP_003232178.1 | integrase | Not tested | LEE | Protein | 2e-109 | 53 |
| int-phe | AAL57571.1 | CP4-like integrase | Not tested | LEE | Protein | 1e-109 | 53 |
| int | AAL51028.1 | CP4-like integrase | Not tested | LEE | Protein | 1e-109 | 53 |
| Z4313 | NP_289539.1 | pathogenicity island integrase | Not tested | OI-122 | Protein | 7e-109 | 52 |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 6e-100 | 52 |
| unnamed | ABR13507.1 | phage integrase | Not tested | PAGI-6 | Protein | 2e-93 | 49 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 8e-63 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pecwa_1693 | YP_003259087.1 | integrase | VFG1536 | Protein | 2e-105 | 57 |
| Pecwa_1693 | YP_003259087.1 | integrase | VFG0626 | Protein | 1e-109 | 53 |
| Pecwa_1693 | YP_003259087.1 | integrase | VFG1693 | Protein | 2e-109 | 53 |
