Gene Information

Name : Pecwa_1687 (Pecwa_1687)
Accession : YP_003259081.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 1841667 - 1841861 bp
Length : 195 bp
Strand : -
Note : PFAM: prophage CP4-57 regulator; KEGG: eca:ECA1627 prophage regulatory protein

DNA sequence :
ATGACAGCTCATCAGTTATTACGCCTGAAACAAGTGGAAGTAAAAACCGGTCTGAAACGCTCGCAAATCTACCTGTACAT
GAAAGAAGGCACCTTTCCCTCTTCAATAAAGATTGGACCTGCCAGCGTAGCTTGGCTGGAATCTGAAATTGACGAATGGA
TTAACTTCAAATTAGCTAACCGCTTAATGCGCTGA

Protein sequence :
MTAHQLLRLKQVEVKTGLKRSQIYLYMKEGTFPSSIKIGPASVAWLESEIDEWINFKLANRLMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 6e-20 88
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 7e-20 86
unnamed CAA21398.1 - Not tested HPI Protein 1e-19 86
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 1e-08 50
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-10 50
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 50
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 50
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 6e-11 48
ORF C109 AAN62202.1 phage-related protein Not tested PAGI-2(C) Protein 7e-10 42
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 2e-09 41
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 2e-09 41
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 2e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_1687 YP_003259081.1 phage transcriptional regulator, AlpA VFG1118 Protein 8e-11 50
Pecwa_1687 YP_003259081.1 phage transcriptional regulator, AlpA VFG1141 Protein 6e-10 41