Gene Information

Name : Pecwa_1669 (Pecwa_1669)
Accession : YP_003259066.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1808136 - 1809401 bp
Length : 1266 bp
Strand : +
Note : PFAM: integrase; KEGG: eca:ECA2879 integrase

DNA sequence :
ATGGCACTCACGGACATCAAGGTACGTTCAACAAAACCGGAAGAGAAGCCTTATAAACTTACCGATGGAAACGGTATGTT
TCTTTTGGTCCATACCAATGGGTCTAAATATTGGCGCTTACGCTATCGTTCGGATGGCAAAGAAAAGACGCTGGCGCTAG
GTGTCTACCCCGAAGTTTCCCTTTCTGAAGCGCGTCAGAAACGTGATGAGGCGCGAAAACTTATTGCTGCTGGCGTTGAT
CCTAACGAGCATAAAAAAGCAGTCAAAACTCAACAACAGGATGATGCGCAAACTTTCGAAGTTGTAGCCCGCGCCTGGCA
CGCCGACAACAAGAAATGGTCAGGCTCCCATGCTGAACGTATCCTGAAAAGTCTCAGTGACAATATTTTCCCCGCCATCG
GTGGCGCTCATATCGCAAATCTGAAAACACGCGACTTGCTGACACCAATTAAAAGCGTTGAACGTTCAGGACGTTTAGAA
GTGGCTAAGCGTCTAAAACAACGTGTGACCGCCATCATGACCTATGCCGTACAAAACGGCCTGATTGATTATAATCCGGC
GCAGGATATGGCAGGGGCGATAATGCCAGGCAAAGTTGAACATCGCCCGGCATTAGCGCTTGAACGCTTGCCTGAACTTC
TTGGCCGCATTGACGGTTACAAAGGCCGTGAGTTTACCAAGTGGGTTATTAATCTCTCCTTACTGATTTTCATTCGTTCC
AGCGAGCTCCGTTTTGCTCGCTGGCCGGAAATCGACTTTGAACGAGCGTTGTGGACGATTCCCCCTGAACGTGAACCAAT
CCCCGGAGTGAAATTCTCTGAACGCGGTTCAAAAATGCACACACCACATCTTGTTCCGCTGAGCCGTCAGGCACTGGAGA
TCCTTAAAAAGATCAGAGAGGTGAGCGGGCATTGTGAACTGGTTTTCATTGGCGACCATTCGTCACGAAAACCCGTTAGT
GAAGGTACGGTAAACAAAGCGCTGCAAACGATGGGCTACGACACCAAAACGGAAGTGTGTGGTCACGGCTTTCGTACCAT
GGCCTGTAGTTCACTGATTGAGTCGGGCTTGTGGTCTAGGGATGCGGTAGAGCGGCAGATGAGCCACCAGGAACGTAACG
GTGTTCGTGCTGCGTACATTCATAAGGCGGAGCATTTGGACGAACGTAAGCTGATGCTGCAATGGTGGGCAGATTTTCTT
GATGCAAATCGGGAGAGGGGAGTTAGTCCGTTTGATTTTGGGAAGGTAAAGTACAGGGAAGTTTAA

Protein sequence :
MALTDIKVRSTKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVSLSEARQKRDEARKLIAAGVD
PNEHKKAVKTQQQDDAQTFEVVARAWHADNKKWSGSHAERILKSLSDNIFPAIGGAHIANLKTRDLLTPIKSVERSGRLE
VAKRLKQRVTAIMTYAVQNGLIDYNPAQDMAGAIMPGKVEHRPALALERLPELLGRIDGYKGREFTKWVINLSLLIFIRS
SELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKIREVSGHCELVFIGDHSSRKPVS
EGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLDERKLMLQWWADFL
DANRERGVSPFDFGKVKYREV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-136 72
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-137 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 9e-135 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-137 68
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-137 68
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-137 68
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-135 67
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-137 67
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-138 67
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-138 67
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-137 67
int AAK00456.1 Int Not tested SHI-1 Protein 3e-128 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-136 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-136 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-136 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-136 67
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-136 67
int CAC81896.1 integrase Not tested LEE II Protein 2e-126 67
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-135 67
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-136 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-135 67
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-136 67
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-120 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-120 61
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 9e-114 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 8e-81 55
int CAB59974.1 integrase Not tested HPI Protein 1e-114 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-109 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-109 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 5e-113 54
int CAA08754.1 integrase Not tested HPI Protein 1e-113 54
int2 NP_993013.1 integrase Not tested HPI Protein 5e-113 54
int CAA21384.1 - Not tested HPI Protein 5e-113 54
int YP_002346908.1 integrase Not tested HPI Protein 5e-113 54
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-89 54
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-110 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-100 52
int AAD44730.1 Int Not tested SHI-2 Protein 2e-80 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-81 45
int CAC39282.1 integrase Not tested LPA Protein 5e-81 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-79 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-79 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-79 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 8e-79 43
int ACU09430.1 integrase Not tested LEE Protein 6e-79 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 8e-79 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 6e-79 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 9e-71 41
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_1669 YP_003259066.1 integrase VFG1536 Protein 2e-136 72
Pecwa_1669 YP_003259066.1 integrase VFG0626 Protein 2e-138 67
Pecwa_1669 YP_003259066.1 integrase VFG1693 Protein 8e-136 67
Pecwa_1669 YP_003259066.1 integrase VFG0598 Protein 3e-79 44
Pecwa_1669 YP_003259066.1 integrase VFG0783 Protein 3e-79 43