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Name : Pecwa_1412 (Pecwa_1412) Accession : YP_003258818.1 Strain : Pectobacterium wasabiae WPP163 Genome accession: NC_013421 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 1531921 - 1533843 bp Length : 1923 bp Strand : + Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: eca:ECA3109 general secretion pathway protein D DNA sequence : ATGGCGTCATCGTTAGCGTGGAGCGCTGAGTTCTCCGCCAGCTTCAAAGGTACGGATATTCAGGAGTTTATCAATACCGT CAGTAAGAATCTGAATAAGACCGTTATTATCGATCCGTCGGTCAGCGGAACGATTACCGTTCGCAGCTATGACATGATGA ACGAAGAGCAGTATTACCAGTTTTTCCTTAGCGTGTTGGATGTCTACGGATTTACTGTTATTCCTATGGATAACAATGTA TTGAAGATTATTCGCTCAAAAGATGCGAAATCGACATCTATGCCACTGGCGAGCGATGAGCAGCCGGGTATCGGCGATGA AGTCGTTACGCGCGTCGTGCCAGTTAACAATGTAGCGGCACGCGATTTGGCACCGCTGCTGCGCCAGTTGAACGACAACG CGGGTGCCGGGAGTGTGGTGCATTACGAACCCTCGAACGTGTTGCTGATGACTGGGCGCGCGGGTGTCATCAAGCGGCTG ATGACGATCGTCGAACGGGTTGATCAGACGGGCGATCGGAATGTCACCAGTATCCCACTGTCTTACGCGTCCTCGACGGA AGTGGTGAAGATGGTGAACGAACTGAACAAGATGGATGAGAAATCTGCCTTGCCGGGGATGTTGACCGCGAATGTAGTGG CCGACGAACGAACCAACTCAGTGCTGGTACGTGGCGAACCGAATTCACGCCAGCGCGTTATCGATATGGTCAAGCAGCTC GATCGCCAGCAGGCGGTGCAGGGCAATACTAAAGTCATCTATCTCAAATACGCCAAGGCCGCCGATTTGGTCGAAGTGCT TACGGGCGTAGGTGACAGTATCCAAACTGATCAACAGAATGCGTTGCCCGCGCTGCGTAAAGACATTTCGATTAAGGCGC ATGAGCAAACCAACTCGCTGATTGTGAATGCCGCGCCTGACATTATGCGCGATCTGGAACAGGTGATTGCACAGTTGGAT ATCCGTCGTCCGCAGGTATTAGTCGAAGCGATCATCGCGGAAGTACAAGATGCCGATGGGATGAATCTGGGCGTGCAGTG GGCTAATAAAAATGCCGGGACGACGCAATTCACGAATACCGGGTTACCGATCACGACCATGATGGCGGGAGCGGACCAGT TTCGGCGTAATGGGACGCTTAGCACGGCAGCGACGAGTGCACTTGGCAGTTTCAACGGGATTGCCGCCGGTTTCTATCAG GGGAACTGGAGCATGCTGATGACGGCGCTGTCCAGCAACAGTAAGAACGATATTCTGGCAACCCCGAGCATTGTAACGCT GGACAATATGGAAGCGACGTTTAACGTCGGCCAGGAAGTACCTGTATTAGCGGGTTCGCAAACGACATCCGGCGACAACG TTTTCCAAACGGTGGAACGTAAAACGGTCGGTATCAAACTGAAGGTGAAACCCCAAATCAACGAAGGCGACTCCGTTCTA CTGGAAATCGAGCAGGAAGTCTCCAGCGTAGCAGATGCCGCCTCCAGCAGCAGTGCTGAACTGGGCGCAACATTCAATAC GCGCACCGTTAATAACGCAGTGTTGGTCAGCAGTGGCGAAACCGTTGTGGTGGGGGGGTTGTTGGATAAAAGTACGCGTG AGTCTGCCAGTAAAGTCCCCCTATTGGGGGATATTCCGATTCTGGGGCACTTGTTCCGATCCAACAGTCAGGAAACGTCA AAGCGTAATCTGATGCTGTTTATCCGTCCTTCCATTATCCGCGATCGTAGCGAATACCAGAGCGCCTCTGCCAGTAAGTA TCGCTCATTCAACAATGAAGAAGAGAAGCAGCGAAATGTGAGTAACGGTGAGGGAGGGCTGCTGGATAACGACTTGCTGC GCTTACCTGAGGGGGGGAACGCCCATACGTTCCGTCAGGTTCAGTCCTCTATCGTGGCATTTTACCCGGCAGGCGGGAAA TGA Protein sequence : MASSLAWSAEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVSGTITVRSYDMMNEEQYYQFFLSVLDVYGFTVIPMDNNV LKIIRSKDAKSTSMPLASDEQPGIGDEVVTRVVPVNNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRAGVIKRL MTIVERVDQTGDRNVTSIPLSYASSTEVVKMVNELNKMDEKSALPGMLTANVVADERTNSVLVRGEPNSRQRVIDMVKQL DRQQAVQGNTKVIYLKYAKAADLVEVLTGVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLD IRRPQVLVEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAATSALGSFNGIAAGFYQ GNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVL LEIEQEVSSVADAASSSSAELGATFNTRTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETS KRNLMLFIRPSIIRDRSEYQSASASKYRSFNNEEEKQRNVSNGEGGLLDNDLLRLPEGGNAHTFRQVQSSIVAFYPAGGK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-118 | 45 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-127 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pecwa_1412 | YP_003258818.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-117 | 43 |
