Gene Information

Name : Pecwa_1388 (Pecwa_1388)
Accession : YP_003258795.1
Strain : Pectobacterium wasabiae WPP163
Genome accession: NC_013421
Putative virulence/resistance : Virulence
Product : GTP-binding protein HSR1-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 1506995 - 1507870 bp
Length : 876 bp
Strand : -
Note : PFAM: GTP-binding protein HSR1-related; KEGG: pct:PC1_2882 GTP-binding protein HSR1-related

DNA sequence :
ATGCCCAACCACGAGAACCTGAGAGAGATACAGGCGTCGCTGTCAGTATTGCCGGATAGCCTGCACCAGCGCGTCATTGA
CCACATTGAACAACTGATCCAATACGAACCCGTCATCGGCATTATGGGGAAAACCGGTGTAGGTAAATCCAGTCTGTGTA
ATGCATTGTTTCAGGGGGAAGTGTCCCCGGTCAGTGATAGCCGTGCGTGCACGCGGCACGCCCTTACGTTCCGGCTGTCA
TCAGGACAACGCAGCATTCTGTTTGTTGATTTACCCGGTGTCGGTGAGAGTGAGGAGCGGGACCATGACTATGCCGGGCT
CTATCAGCACTGGTTGCCGCGCGTTGATATTGTCCTCTGGTTACTCAAGGCCGATGACCGAGCGCTTGCCATTGACCAGC
ATATCTATCGCACCGTTATCGGTGAGCGCTACCGTGACAAGATACTGTTCGTTCTGAATCAGGTCGACAAGCTGGAGCCC
AGTCACGAATGGGACAGGGAGTCACAGCAACCCTCACTCAAGCAGTCCGGCAATATCTATGCCCGTCGTGTCGCAGTGCG
TTCCACCTTCTTTCCTATCCATCCGGTCTGCGCTGTATCGGTAAAAACCGGCTGGGGCATGGCAGCAATGGTGGAGACGC
TGTTTCAGTGTTTACCGCCTAAGGCCAGTAGTCCGCTGTCAGCCCGCTTACAGCCCGACTGGCGTTCAGTGGCTATTGAG
AACCGGGCTCAGGATGATTTTGCCCAGTCGGTCGGCGACGTACTTGATAGCGTGATTGCGCTGCCTGTCGTCCCTTCGCC
GCTAAAAATACTTATCGGCGGCCTCAAACAAACCGTGGTGTCACTCGCCCGTTCATTGTGGTCACTGCTGTTCTAG

Protein sequence :
MPNHENLREIQASLSVLPDSLHQRVIDHIEQLIQYEPVIGIMGKTGVGKSSLCNALFQGEVSPVSDSRACTRHALTFRLS
SGQRSILFVDLPGVGESEERDHDYAGLYQHWLPRVDIVLWLLKADDRALAIDQHIYRTVIGERYRDKILFVLNQVDKLEP
SHEWDRESQQPSLKQSGNIYARRVAVRSTFFPIHPVCAVSVKTGWGMAAMVETLFQCLPPKASSPLSARLQPDWRSVAIE
NRAQDDFAQSVGDVLDSVIALPVVPSPLKILIGGLKQTVVSLARSLWSLLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 6e-58 46
unnamed AAL08471.1 unknown Not tested SRL Protein 9e-60 46
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 2e-58 46
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 5e-58 46
Z1210 NP_286745.1 histone Not tested TAI Protein 2e-57 46
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 3e-59 46
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 2e-57 46
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 8e-60 45
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-58 45
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 3e-59 45
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 3e-59 45
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 8e-59 45
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 1e-57 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pecwa_1388 YP_003258795.1 GTP-binding protein HSR1-like protein VFG0654 Protein 3e-58 46
Pecwa_1388 YP_003258795.1 GTP-binding protein HSR1-like protein VFG1062 Protein 5e-60 46
Pecwa_1388 YP_003258795.1 GTP-binding protein HSR1-like protein VFG1674 Protein 2e-59 46