|
Name : D11S_0988 (D11S_0988) Accession : YP_003255594.1 Strain : Aggregatibacter actinomycetemcomitans D11S-1 Genome accession: NC_013416 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : - Position : 907154 - 908560 bp Length : 1407 bp Strand : + Note : identified by Glimmer3; putative DNA sequence : ATGGCGTCTAAGAATTCACCTCCTGCAAAAGAAAAAAATACCACCAATTTAAATATTCCCCCTCATTCCATTGAAGCCGA ACAAGCGGTGTTAGGCAGTATTTTATTGAACAATTTTTATTGGGATGATGTAGCGGAAAATGTGGTGAAAGAGGATTTTT ACCGCTTTGAGCATCGCCTGATTTTTGAGGAAATGGAAAAGCTCATTGCGCAACAGGCGCCGGTGGATTTAATCACTTTG GAACAAGCCCTCAAAAGCCGTGAAGTGATTGAACAGGTAGGCGGCTTCGCTTATTTGGCGGAACTTTCCAATAACACGCC AAGTGCCGCCAACGTGGTGGCGTATGCGAATGTGGTGCGGGAAAAAGCCATTATGCGCGAATTGATTTCCGTGGGGAATA AAATCGCGCAGAACAGTTATTCGCCGAAAGGGCAGGATGTGAAACATTTGCTGGACGAAGCGGAACGGGAAGTGTTTGCC ATCGCGGAAAAACGTACCTCGGGCAATGAAGGTCCGCAAAATATTATCGCCATTCTGGAAAATACTATCAGTAAAATCGA ACAACTCAGTCAAGCCAAAGATCATTCCGGCGTCACCGGCGTTTCTACCGGCTTTAAAGATTTGGATAAAAAAACCGCCG GCTTGCAAAAATCCGATTTGATTATTGTGGCGGCGCGTCCTTCCATGGGGAAAACCACGTTTGCTATGAATCTGTGTGAA AATGCGGCGTTAGGCAGTGAAAAACCGGTGTTGGTATTCAGTTTGGAGATGCCGGCGGAACAAATTATGATGCGTAGCCT TGCGTCACTTTCCCGCGTGGACCAAACTAAAATTCGTACCGGTCAGGGGTTGGACGATAACGACTGGGCGAAAATTTCCA GTACCATGGGCGTACTTGCTAAAAAGCCGAATTTATTTATTGATGACTCCTCAGGGTTAACGCCAACAGAGCTACGTTCC CGTGCCAGACGGGTGTATCGGGAAAACGGCGGATTAAGTTTAATCATGGTGGACTATCTTCAATTAATGCGCGCACCGGC ATTTTCTGATAATCGAACGTTGGAAATTGCGGAAATTTCGCGTTCTTTAAAAGCCTTGGCAAAAGAATTGGAAGTGCCGG TGATCGCCCTGTCACAATTAAACCGTACGTTGGAAAACCGTCAGGATAAACGCCCCGTGAACTCGGATTTACGGGAATCT GGCTCCATTGAGCAGGATGCGGATTTGATCATGTTTATTTATCGTGATGAAGTGTATAACCGCGAGTCGGAAGAAAAAGG CATTGCGGAAATTATTATCGGTAAACAGCGTAACGGCCCTATCGGGCGCGTAAAACTGGCGTTCCAAGGACAATTTTCCC GGTTTGATAATTTGGCGGAACATCATTATTACGATGATGAATATTAA Protein sequence : MASKNSPPAKEKNTTNLNIPPHSIEAEQAVLGSILLNNFYWDDVAENVVKEDFYRFEHRLIFEEMEKLIAQQAPVDLITL EQALKSREVIEQVGGFAYLAELSNNTPSAANVVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDEAEREVFA IAEKRTSGNEGPQNIIAILENTISKIEQLSQAKDHSGVTGVSTGFKDLDKKTAGLQKSDLIIVAARPSMGKTTFAMNLCE NAALGSEKPVLVFSLEMPAEQIMMRSLASLSRVDQTKIRTGQGLDDNDWAKISSTMGVLAKKPNLFIDDSSGLTPTELRS RARRVYRENGGLSLIMVDYLQLMRAPAFSDNRTLEIAEISRSLKALAKELEVPVIALSQLNRTLENRQDKRPVNSDLRES GSIEQDADLIMFIYRDEVYNRESEEKGIAEIIIGKQRNGPIGRVKLAFQGQFSRFDNLAEHHYYDDEY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-89 | 51 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 2e-89 | 51 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 1e-85 | 50 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 1e-87 | 50 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 1e-86 | 50 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 6e-79 | 48 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 6e-79 | 48 |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 2e-72 | 47 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 2e-69 | 46 |
