Gene Information

Name : D11S_0458 (D11S_0458)
Accession : YP_003255087.1
Strain : Aggregatibacter actinomycetemcomitans D11S-1
Genome accession: NC_013416
Putative virulence/resistance : Resistance
Product : SoxR protein
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 418561 - 419010 bp
Length : 450 bp
Strand : -
Note : identified by Glimmer3; putative

DNA sequence : 
TTGTGCGGTCGTTTTCACGGACGTTTTTACGGAGATAACATGAAAATAGGGAAGTTAGCCAAAGCTGTAGGGTGTAGCGT
GGAAGCCATTCGATTTTACGAACAAAAAGGCTTGATGCCTCGCCCGCCCCGTTCCGCCGGCGGTTTTCGTTTATACACGG
ACGAACATTTGCAACGCCTGTCGTTTATTTGTTATTGCCGCTCCTTGGATATGTCTCTTAAAGAAATCAAATTGCTGTTG
AGCCTGGAAAGTGCTTCCGAACAACAAAAAGCGGAAATCAATCAATTGCTCGATCGACATATTCAAGACATTGCCAAACA
CATCCACCGCCTACAACATTTACGCATGAATCTCATCCAACTGAAACAACAATGCGGAGAAGTGAATCAGCAACAAAACT
TGCTGCGAATCCTGCAATACAGTCAGGTAAAGTTTAGACCGTTGAAGTAA

Protein sequence : 
MCGRFHGRFYGDNMKIGKLAKAVGCSVEAIRFYEQKGLMPRPPRSAGGFRLYTDEHLQRLSFICYCRSLDMSLKEIKLLL
SLESASEQQKAEINQLLDRHIQDIAKHIHRLQHLRMNLIQLKQQCGEVNQQQNLLRILQYSQVKFRPLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 2e-17 43
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 3e-18 43
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 2e-18 43
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 3e-18 43
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 2e-18 43
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 1e-18 43
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 1e-18 43
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 1e-18 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_0458 YP_003255087.1 SoxR protein BAC0058 Protein 5e-21 43