|
Name : D11S_1770 (D11S_1770) Accession : YP_003256352.1 Strain : Aggregatibacter actinomycetemcomitans D11S-1 Genome accession: NC_013416 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1702389 - 1703705 bp Length : 1317 bp Strand : - Note : identified by Glimmer3; putative DNA sequence : ATGATCGATCCGAATTTATTACGCAATAATCCGGCGGACGTCGCTGAAAAATTAAAAATTAAACGCGGTTTCGTGTTGGA TACGGCAAAAATTACCCAATTAGAAGAACAACGCAAAGCGTTACAAGTTAAAACCGAAAATTTACAGGCGGAGCGTAATG CCCGTTCCAGAGCCATCGGTGCGGCAAAAGCCCGTGGTGAAGACATCGCCCCTTTATTGGCGGAAGTAGATCACATGGCG GAAGAATTGGAGCAGGGTAAAATTGAATTAGATAAAGTACAAAACGCTTTAAATGACATCGCTTTAAACATTCCGAATAT TCCCGCCGATGAAGTGCCGTTAGGCAAAGACGATAGTGAAAATCTTGAAGTGTCCCGCTGGGGCGAACCGCGTAAATTCG ATTTTGAAGTGAAAGATCATGTGACCCTAGGTGAAAATCTACAAGGCTTGGATTTTGCCGCAGCGGTGAAATTAACCGGT TCCCGTTTTGTGGTGATGAAAGGGCAAATTGCCAAATTACACCGCGCCATTGCGCAATTTATGTTGGATTTGCACACCGA ACAACATGGTTACACTGAAGCCTACGTGCCTTATTTGGTCAACCATGACACCCTTTACGGCACAGGTCAGTTGCCGAAAT TCGGCGAAGATTTATTCCACACTAAACCGTTGGAAGGACAAGATCCGAACGAAGTACAACGCACTTACGGCTTAATTCCG ACGGCAGAAGTGCCTGTGACCAATTTGGTGCGTGGTGAAATTTTGGACGCGGAAAATTTACCGTTAAAAATGACCGCACA TACGCCGTGTTTCCGTTCCGAGGCGGGCTCTTATGGGCGTGATACGCGCGGCTTAATTCGTATGCACCAATTTGATAAAG TGGAATTGGTGCAAATCGTTGAACCGGAAAAATCCATGGAGGCGTTGGAAGAGTTAACCGGTCATGCGGAAAAAGTGTTG CAATTGCTCGGTTTGCCGTATCGTAAAGTGTTGCTTTGCACCGGTGACATGGGCTTCGGTTCCTGCAAAACCTACGATTT GGAAGTGTGGGTGCCTGCGCAAAACACCTATCGTGAAATTTCTTCCTGCTCCAATATGTGGGATTTCCAAGCCCGTCGTA TGCAAGCCCGTTGCCGTTCAAAAGGCGACAAGAAAACCCGTTTGGTGCACACCTTAAATGGCTCGGGTTTGGCTGTGGGA CGTACTTTGGTGGCGGTGTTGGAAAACTACCAAAACGCCGACGGTTCCATTACCGTACCGGAAGTCTTGCGTCCTTACAT GGGCGGATTGGATGTGATTGGCAAATCCGCGAAATAA Protein sequence : MIDPNLLRNNPADVAEKLKIKRGFVLDTAKITQLEEQRKALQVKTENLQAERNARSRAIGAAKARGEDIAPLLAEVDHMA EELEQGKIELDKVQNALNDIALNIPNIPADEVPLGKDDSENLEVSRWGEPRKFDFEVKDHVTLGENLQGLDFAAAVKLTG SRFVVMKGQIAKLHRAIAQFMLDLHTEQHGYTEAYVPYLVNHDTLYGTGQLPKFGEDLFHTKPLEGQDPNEVQRTYGLIP TAEVPVTNLVRGEILDAENLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQIVEPEKSMEALEELTGHAEKVL QLLGLPYRKVLLCTGDMGFGSCKTYDLEVWVPAQNTYREISSCSNMWDFQARRMQARCRSKGDKKTRLVHTLNGSGLAVG RTLVAVLENYQNADGSITVPEVLRPYMGGLDVIGKSAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-105 | 54 |
