Gene Information

Name : D11S_1642 (D11S_1642)
Accession : YP_003256225.1
Strain : Aggregatibacter actinomycetemcomitans D11S-1
Genome accession: NC_013416
Putative virulence/resistance : Virulence
Product : AfeB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 1574986 - 1575876 bp
Length : 891 bp
Strand : +
Note : identified by Glimmer3; putative

DNA sequence : 
ATGTCATCAAATATTGCCTCTATTTGCGTTGAAGACGTAGTCGTTCGTTACAACAATGGTCATACCGCCATTCATGATGT
TTCTTTTAAACTAGAAGGCGGTACGACCTGCGCTTTAGTCGGCGTGAACGGGAGCGGTAAGTCAACCCTGTTTAAAAGTC
TGATGGGGTTAATTACACCGCAACGAGGTAATATTTCTCTTTGCAATCTCACAATTAAACAAGCCTTAAAACAAAATTTA
GTGTCTTATGTGCCACAATCGGAAGACGTGGACTGGCAATTTCCGGTCTCTGTTTACGATGTGGTGCTGATGGGGCGCTA
TGGTTACATGAACTTCCTGCGCCGTCCGAGTGAAACGGACAAACAAAAGGTGCAGGAAGCCATGCAACGGGTGAACATTG
AACACCTTGCCCATCGCCAAATCGGCGAGCTTTCCGGTGGGCAAAAAAAACGGGCATTTCTTGCTCGCGCGCTCGCACAA
CAAAGTAAGATTATTTTATTGGACGAACCTTTCACCGGCGTAGATGTACAAACGGAAAACGCCATTATTGATTTATTAGG
TCAGTTACGCAGTGAAGGGCATTTAATTCTGGTTTCCACGCACAATTTAGGTTCCGTGCCGGATTTTTGTGATCGCGTGG
TAATGATTAACCGCACGGTAATCGCTGCAGGTTTGACCGAAACTACTTTTAACCAGCATAACTTGGAATTGGTTTTTGGC
GGTGTGTTGCGCCACATTAAGCTATTAGGCGAAGACTTGCATGATGACGAGGACCCACGCGCCGTTACGGTATTAACCGA
TGATGAGCGGGCAGCGGTATTCTATGGTAAAACTAAAATTGATCCACCGGCACCTACTGTCAGATATACCAAACCGAAGG
AAGACGCATAA

Protein sequence : 
MSSNIASICVEDVVVRYNNGHTAIHDVSFKLEGGTTCALVGVNGSGKSTLFKSLMGLITPQRGNISLCNLTIKQALKQNL
VSYVPQSEDVDWQFPVSVYDVVLMGRYGYMNFLRRPSETDKQKVQEAMQRVNIEHLAHRQIGELSGGQKKRAFLARALAQ
QSKIILLDEPFTGVDVQTENAIIDLLGQLRSEGHLILVSTHNLGSVPDFCDRVVMINRTVIAAGLTETTFNQHNLELVFG
GVLRHIKLLGEDLHDDEDPRAVTVLTDDERAAVFYGKTKIDPPAPTVRYTKPKEDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-74 61
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-74 61
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-73 60
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-73 60
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-72 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_1642 YP_003256225.1 AfeB BAC0440 Protein 6e-96 70
D11S_1642 YP_003256225.1 AfeB BAC0350 Protein 3e-73 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_1642 YP_003256225.1 AfeB VFG0526 Protein 2e-73 60