Gene Information

Name : D11S_1641 (D11S_1641)
Accession : YP_003256224.1
Strain : Aggregatibacter actinomycetemcomitans D11S-1
Genome accession: NC_013416
Putative virulence/resistance : Virulence
Product : AfeA
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1574105 - 1574986 bp
Length : 882 bp
Strand : +
Note : identified by Glimmer3; putative

DNA sequence : 
ATGCGTTTATTAGCCACATTAGTCAGCGTACTTGCGTTAAGCTTAAGCAGTAGTCTTGCTTATGCGAAATTTAAAGTTGT
CACTACGTTCACTATTATTCAAGATATGGCACAAAATGTCGCCGGTGATGCGGCAACCGTAGAGTCCATCACCAAGCCCG
GAGCAGAAATCCATGATTACGAGCCAACCCCGAAAGATATTGTCAAGGCACAATCTGCCGATTTAGTGTTATGGAATGGT
TTGAACCTTGAGCGTTGGTTTGAAAAATTCTTCCAAAACGTCAAAGATAAACCGGCGGTCGTTGTAACCGAAGGCATTGA
GCCGATGTCAATTCATGAAGGTCCGTACACCGGCAACCCGAACCCGCATGCCTGGATGTCACCTTCCAATGCGTTAATCT
ATGTTGAAAATATTAAAAATGCGTTGATTAAATACGATCCGCAAAATAAAGAAACATACGAAAAAAATACCGCACTTTAT
ATCCAAAAAATCAAAGAACTTGATCAACCGTTGCGTGAAAAATTAGCACAAGTGCCGGAAGCACAGCGTTGGTTGGTGAC
CAGCGAAGGCGCATTCAGTTATTTAGCACGTGATTACGGTTTTAAAGAGGCTTATTTGTGGCCGATTAACGCTGAGCAAC
AAGGCACGCCGCAACAAGTGCGTAAAGTAATTGAAACCGTCAAAGCCAACAATATTCCGGTCGTATTCAGTGAAAGCACC
ATCTCCCCGAAACCGGCAAAACAAGTAGCAAAAGAAACCGGTGCAAAATACGGTGGCGTGCTTTATGTTGACTCTCTTTC
CGGTGCCAAGGGTCCTGTGCCGACTTATATTGATTTATTAAAAGTGACTGTTTCTACCATTGCTAAAGGATTTGAAAAAT
AA

Protein sequence : 
MRLLATLVSVLALSLSSSLAYAKFKVVTTFTIIQDMAQNVAGDAATVESITKPGAEIHDYEPTPKDIVKAQSADLVLWNG
LNLERWFEKFFQNVKDKPAVVVTEGIEPMSIHEGPYTGNPNPHAWMSPSNALIYVENIKNALIKYDPQNKETYEKNTALY
IQKIKELDQPLREKLAQVPEAQRWLVTSEGAFSYLARDYGFKEAYLWPINAEQQGTPQQVRKVIETVKANNIPVVFSEST
ISPKPAKQVAKETGAKYGGVLYVDSLSGAKGPVPTYIDLLKVTVSTIAKGFEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-93 67
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-93 67
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-93 67
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-93 67
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-93 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_1641 YP_003256224.1 AfeA BAC0439 Protein 2e-104 76
D11S_1641 YP_003256224.1 AfeA BAC0349 Protein 8e-94 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_1641 YP_003256224.1 AfeA VFG0525 Protein 7e-94 67