Gene Information

Name : D11S_1513 (D11S_1513)
Accession : YP_003256108.1
Strain : Aggregatibacter actinomycetemcomitans D11S-1
Genome accession: NC_013416
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1436157 - 1437140 bp
Length : 984 bp
Strand : +
Note : identified by Glimmer3; putative

DNA sequence : 
ATGATGTTTGGTTCAATTTCAGGTTCCGCAGTAGCATCAGGTGCAGCGATGGGCGGGATTATGTCCCCATTACAAAAGAA
AGAAGGTTATGACCCGTCTTTTTCTGCAGCTGTTAATATAGCGTCTTGCCCAACCGGATTATTAATTCCACCAAGTAATA
CCTTCATTGTGTATTCCTTGATTTCAGGTGGCACATCTATCGGCGCATTATTCCTTGCTGGTTACATTCCAGGTATTTTG
ATGGGACTATCGATCATGGTTATCGTCGCTGTTATTGCGAAAAAAAGAAAATACCCGGTTTCTCCAAAACCAACGCGTTC
TGAAGCGATGAAAAAAACGCTGGATGCGTTACCAAGTCTTGGGTTGATCATTGTTATCATGGGAGGAATCATCGGCGGTA
TCTTCACTGCAACAGAAGCGTCTGCTTTCGCTGTTGTTTATACCTTAATTCTTGCCGTTGTTTTCTATCGTGAAGTAACC
ATCAAAGAATTACCAAAAATTATTTTAGATTCTGTTGTAACAACCGCCATTGTACTTCTCTTAATTGGTACATCAATGGG
TATGTCTTGGGCAATGGCAAATGCGGATATTCCTTACACTATTAGTGATGCACTATTAAACATTTCTGACAATCCAATTG
TTATCCTATTAATCATCAACATTATTCTATTAATTGTCGGCGTATTCATGGATATGACACCTGCATTACTTATTTTCACT
CCAATTTTCTTACCTATCGTCACTGAATTAGGTATGGATCCGGTTCACTTTGGTGTATTAATGGCATTCAACCTTTCTAT
CGGTATCTGTACTCCACCGGTTGGTAGTGCATTATTCATCGGTTGTTCTGTTGGCGGCATAAAAATTAATCAGGTTATTA
ATCCATTGTTACCATTTTATTTTGCCCTCATTATGACGTTATTACTGGTGACTTATGTTCCATCATTAAGTTTAGCATTA
CCACGAATGTTATTAGGTTATTAA

Protein sequence : 
MMFGSISGSAVASGAAMGGIMSPLQKKEGYDPSFSAAVNIASCPTGLLIPPSNTFIVYSLISGGTSIGALFLAGYIPGIL
MGLSIMVIVAVIAKKRKYPVSPKPTRSEAMKKTLDALPSLGLIIVIMGGIIGGIFTATEASAFAVVYTLILAVVFYREVT
IKELPKIILDSVVTTAIVLLLIGTSMGMSWAMANADIPYTISDALLNISDNPIVILLIINIILLIVGVFMDMTPALLIFT
PIFLPIVTELGMDPVHFGVLMAFNLSIGICTPPVGSALFIGCSVGGIKINQVINPLLPFYFALIMTLLLVTYVPSLSLAL
PRMLLGY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-35 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-35 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
D11S_1513 YP_003256108.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-35 41