|
Name : lysS (D11S_1080) Accession : YP_003255686.1 Strain : Aggregatibacter actinomycetemcomitans D11S-1 Genome accession: NC_013416 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 995099 - 996607 bp Length : 1509 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAGAACAAGAAGTCAAAGAATTAGACCTGAACGGCGAAATGTTGGTGCGTCGTGAAAAATTAGCCGCCTTGCGCGC CAAAGGCAATGCCTTCCCGAACCAATTCCGTCGCGATGCGCTTGCACAGGATTTGCACGATAAATATGATGCCGAAGAGG GCGAAGCATTAAAAGAAAAACACATTGAAGTTACCGTTGCCGGACGTATCATGACTCGTCGCGCCATGGGTAAAGCCACC TTTATCACCATTCAAGATATGAGCGGCAAAATTCAGCTTTATGTGGCGCGCAATAACTTGCCTGAAGGCGTGTATAAAGA TGATGTAGGTCACTGGGATTTGGGTGACATTGTCGGTATTAAAGGTTCGCTATTCAAAACCAAAACCGACGAACTCACCG TGAAAGCCACCAAAGTTCAGTTATTAACCAAAGCCCTTCGCCCGCTGCCGGACAAATTCCACGGTTTAACCGACCAAGAA GTGCGTTATCGTCAACGTTATTTGGATTTAATTTCTAACGAAGAATCCCGCCGCACTTTCATCATTCGTTCTAAAGTCGT CGCCGGCATTCGTGAATATTTCCTTTCCAAAGGCTTCATGGAAGTGGAAACCCCAATGTTGCAAGTGATTCCGGGTGGTG CAGCGGCTCGTCCGTTTGTCACACATCACAATGCCTTAGACGTGGATATGTATTTGCGTATCGCACCGGAACTTTACTTA AAACGTTTAGTGGTGGGCGGCTTTGAACGCGTATTCGAATTGAACCGCAATTTCCGCAACGAAGGTGTTTCCGTGCGTCA CAATCCCGAATTCACCATGCTGGAATACTACCAAGCCTACGCCGATTACCATGATTTAATGGACAACACCGAAGAATTAT TGCGCAAATTGGCGATTAATATTTTAGGCACCACCATCGTGAAATATGGCGACTTAGAATTTGATTTCGGCAAACCGTTC GAGCGTATCACCTTACACGACGCCACCATTAAATACGGCGCCGAAAAAGGCATCGTAAAAGAAGATTTATACGACTTCGA CCGTGCCAAAGCTACCGCAGAACGCTTAGGCATTGAAGTACAAAAATCCTGGGGCTTAGGCAGCATTGTGAACGCCATCT TTGAAGAAGTGGCAGAACATCACTTAATTCAGCCGACTTTTTTAATGGCTCACCCTGCTGAAATTTCACCGCTCGCCCGT CGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGA ATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGT TTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCTGGCGAGGGCTTAGGCATCGACCGCCTG GCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAGGTAA Protein sequence : MSEQEVKELDLNGEMLVRREKLAALRAKGNAFPNQFRRDALAQDLHDKYDAEEGEALKEKHIEVTVAGRIMTRRAMGKAT FITIQDMSGKIQLYVARNNLPEGVYKDDVGHWDLGDIVGIKGSLFKTKTDELTVKATKVQLLTKALRPLPDKFHGLTDQE VRYRQRYLDLISNEESRRTFIIRSKVVAGIREYFLSKGFMEVETPMLQVIPGGAAARPFVTHHNALDVDMYLRIAPELYL KRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMLEYYQAYADYHDLMDNTEELLRKLAINILGTTIVKYGDLEFDFGKPF ERITLHDATIKYGAEKGIVKEDLYDFDRAKATAERLGIEVQKSWGLGSIVNAIFEEVAEHHLIQPTFLMAHPAEISPLAR RNDENPEVTDRFELFIGGREIGNGFSELNDAEDQNDRFDAQVAAKEAGDDEAMFKDEDFVIALEHGLPPTAGEGLGIDRL AMLYANAPSIRDVILFPAMRQR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-152 | 63 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 5e-89 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003255686.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-152 | 63 |
