|
Name : GYMC61_3598 (GYMC61_3598) Accession : YP_003254624.1 Strain : Genome accession: NC_013412 Putative virulence/resistance : Unknown Product : Fis family transcriptional regulator Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 37251 - 39170 bp Length : 1920 bp Strand : + Note : KEGG: rme:Rmet_1588 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; PAS fold domain protein; SMART: ATPase AAA; PA DNA sequence : GTGTTTACATATAGCAAACTCACAAGGATTCTTCAAGAAGTTTTAGCTGAAAAACAATGGCCGGCCGAGTTTATACTTCA TGAAGTTTTAATTGAGGAAGCGATAAAAAAAGCACATGAAATCGAAAAAACTAATTCAGCTGATGTAATTGTTGCCTCAG GAGCTAATGCAACCGCGATTGAAGAACAGGGATTAAGTATCCCTGTAGTCCGAATTAAAGTAACAGGTTTTGATCTAGTG AATGCACTATGGCTTGCTAAGCGCATGAATAGACAAGCAGTAGTTATGTCTTATCAGGAACCAATTCCGCAGTTGGAACA GTTTCGTGATTTGTTTCGTGTAGATTTGATGCAGGAGGCTTACGATGGAGTTCACGATGCACAAGAGAAGTTATTACGCA TATTAGGAAGTGGGAAATCTGTGATTATTGGTGCAAGCTTAGTTAATGAACTTACGGAGCGAATGGGTGGACATAGTATT TTCATTTACTCTAGATCTTCTATTCGCCTAGCTTTGGAAACAGCTGTAGAGCTTGCAGATCAACGAAGGTCCGAAATTGA AAAAAGACAAAAGATACAAGCTATGATGCGTGCTGTTCATGAAGGGATTTTATATGTGGATACTAACGGACTTCTAATGG AGATTAATCCTGTTGCCGAAAAGTTGCTAGGCGTGTCTGCCCAGGATGTTATCGGGAAATCCATAGACAAAGTTGCTCCT GAGATTAAACTTGATGATGTGTTTAAGAGAGGGAAACCACTGCTCAATGTAGCGCAGAAGACAAAACAAGGTATGCTTTT AGTTAACCGAATTCCTGTAGTCCATCAAGGAGAACTAATTGGAGCTGTGGCAACAATTCAGGATGCGCAAGCCGTACAGA AAGCGGAGAAAGCCATCCGGCATCGGGTATATAGTAAAGGGCTTTTAGCCAAGGCAACATTCGAACATATTATCGGAAAA AACTCTACCTTTATGAAGTTAATCGACAAGGCGCAGCACTATGCCCAAACGGATGCTACAATCTTGATTCGTGGTGAGAC TGGAACGGGAAAAGAGTTATTTGCACAGAGTATTCATAACGCAAGCAATAGGAATCGCCATCCTTTTGTAGCAGTGAATT GTGCGGCTCTACCTGAATCAATTTTAGAAAGTGAACTATTTGGATATGAAGAGGGAGCGTTCACAGGAGCACGTAAGGGT GGAAAACAGGGATTGTTTGAGCTAGCTCACAGGGGAACCATTTTTCTGGATGAGATAGGTGAAATGTCCTTACCCTTGCA ATCCCGTCTTCTTCGAGTTTTACAGGAAAAAGAGGTAATGCGTCTTGGAAGTGACATGGTAATTCCTATCGATGTAAGAA TAATAGCAGCCACCAATCGTGACTTAAAATCGATGGTAAAAGACGGGTTGTTTAGGCAGGATTTGTACTATAGACTTAAT GTACTCTCAATTGAGCTACCACCTCTTAGAGAACGATTAGATGATTTACCCGACTTATTTCGTTTCTTTTTAAAGAATTA CAAATTAGATAAACAACTGATAGAGAAAGTCTTGTCTATTATGTTACCAGTACTGTGTCACCATAACTGGCCGGGAAATA TAAGAGAACTTGAAAATATTGCGGAGCGAGTTTCTGTTCTATTAAAAGCGCATGTCACTATGGACGAGGTATTGGCCGAA GTGAAGAAGGAGCTATTTGGGAGTCATATCGAAATTCTGGATTCAACTGATTTGACTAAAGAAGTTGAAAACTGGGAGCG ACAACGTATTTTACAGGTATTAAGAGAAGTGCGAGGAAGCAAAACCAAGGCAGCGGCTCTTCTAGGGATTAGTCGGACCA CCTTATGGAGAAAGATTAAGGATTACGGAATTGATAGATATGATGACGAGGAAAAATCTAATAATTTGTTTCAAAAATGA Protein sequence : MFTYSKLTRILQEVLAEKQWPAEFILHEVLIEEAIKKAHEIEKTNSADVIVASGANATAIEEQGLSIPVVRIKVTGFDLV NALWLAKRMNRQAVVMSYQEPIPQLEQFRDLFRVDLMQEAYDGVHDAQEKLLRILGSGKSVIIGASLVNELTERMGGHSI FIYSRSSIRLALETAVELADQRRSEIEKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVAP EIKLDDVFKRGKPLLNVAQKTKQGMLLVNRIPVVHQGELIGAVATIQDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGK NSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKG GKQGLFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLN VLSIELPPLRERLDDLPDLFRFFLKNYKLDKQLIEKVLSIMLPVLCHHNWPGNIRELENIAERVSVLLKAHVTMDEVLAE VKKELFGSHIEILDSTDLTKEVENWERQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGIDRYDDEEKSNNLFQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAK01495.1 | propionate catabolism operon regulator prpR | Not tested | PAGI-1 | Protein | 2e-90 | 41 |
