Gene Information

Name : GYMC61_0079 (GYMC61_0079)
Accession : YP_003251261.1
Strain : Geobacillus sp. Y412MC61
Genome accession: NC_013411
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 98163 - 100595 bp
Length : 2433 bp
Strand : +
Note : PFAM: ATPase AAA; Clp ATPase-like; AAA ATPase central domain protein; UvrB/UvrC protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: gka:GK0078 ATP-dependent Clp protease ATPase

DNA sequence :
ATGATGTTTGGCAGATTTACAGAACGGGCGCAAAAGGTGCTGGCGCTGGCGCAGGAAGAAGCCATTCGCCTCGGCCATAA
CAATATCGGCACAGAACATATTTTGCTCGGCCTCATCCGCGAGGGCGAGGGGATCGCGGCTAAGGCGCTCATGGCGCTTG
GGCTCGGCCCAGATAAAATCCAAAAAGAAGTCGAATCGCTCATCGGCCGTGGCAGTGAAGTGTCGCATACGATCCACTAT
ACGCCGCGGGCGAAGAAAGTGATTGAGCTGTCGATGGACGAAGCGCGGAAGCTCGGCCATTCATACGTTGGCACGGAACA
TATTTTGCTCGGGTTGATCCGCGAGGGAGAAGGGGTAGCCGCTCGCGTGCTGAACAATTTGGGCGTAAGCTTGAACAAAG
CGCGCCAACAAGTGTTGCAGCTGCTTGGCAGCAATGAGTCGATGTCAGGCCATGGCGGCGGTGCTTCGCACGTGAGCACG
CCGACGCTTGACAGCCTCGCCCGCGACTTGACGGCGATTGCCCGCGAAGGGCGGCTGGACCCGGTCATCGGCCGCAGCAA
AGAAATTCAGCGCGTTATTGAAGTGTTAAGCCGCCGGACGAAAAATAATCCGGTGTTGATCGGCGAGCCGGGCGTTGGGA
AAACGGCCATTGCTGAAGGGTTAGCCCAACAAATCGTCAATAACGAAGTGCCGGAAACGCTGCGCGACAAGCGGGTCATG
ACGCTCGATATGGGGACGGTCGTCGCCGGAACGAAATACCGGGGGGAATTTGAAGACCGACTGAAAAAAGTGATGGATGA
AATTCGTCAAGCGGGCAACATCATCTTGTTCATCGATGAACTGCATACATTAATTGGCGCCGGTGGGGCGGAAGGAGCGA
TCGACGCGTCGAACATTTTGAAACCGGCGTTGGCGCGCGGGGAGCTTCAATGCATCGGCGCGACAACGCTCGATGAATAC
CGGAAATATATTGAAAAAGACGCCGCGCTTGAACGCCGCTTTCAGCCGATTTACGTGGATGAACCGACAGTGGAAGAATC
GATCCAAATTTTAAAAGGGTTGCGCGATCGGTATGAAGCGCACCACCGCGTTTCGATTTCCGACGAGGCCATTGAGCAAG
CCGTCAAGTTGTCCGACCGTTACATTACCGATCGTTTCCTGCCGGATAAGGCGATCGATTTGATCGACGAGGCTTGCTCG
AAAGTGCGCCTTCGTTCGTTCACTGCACCGCCGAAATTGAAAGAACTTGAACAAAAGCTCGAGGAAGTGCGAAAAGAAAA
AGACGCGGCTGTGCAAAGCCAAGAGTTTGAGAAAGCGGCATCGCTGCGCGATATGGAACAGCGGCTGCGCGAAGAACTGG
AGGAAACGAAACGGGCGTGGAAGGAAAAACAAGGCCAAGAAAATTTGGAAGTGACGGTCGAAGACATCGCCGCGGTTGTC
TCGAGTTGGACCGGCATTCCCGTATCGAAGCTTGCTGAGACGGAAACAGAGCGGCTGCTCAAATTGGAAGAAATTTTGCA
TTCGCGTGTCGTCGGCCAAGATGAGGCGGTCAAAGCGGTCGCCAAAGCAGTGCGCCGCGCCCGTGCTGGCCTGAAAGACC
CGAAACGCCCGATCGGTTCGTTCATTTTCCTTGGTCCGACCGGCGTTGGGAAAACGGAGTTGGCCCGAGCCTTGGCAGAA
GCGATGTTTGGCGATGAAGACGCCCTCATTCGCATCGATATGTCCGAGTATATGGAAAAACACTCGACATCGCGGCTCAT
CGGGTCGCCGCCGGGGTATGTCGGTTATGAAGAAGGCGGCCAGCTGACGGAAAAAGTGCGCCGCAAGCCGTATTCGGTTG
TCCTGTTAGATGAGATGGAAAAAGCGCATCCGGACGTGTTCAATATTTTGCTGCAAGTGTTGGAAGATGGGCGGCTGACT
GACTCGAAAGGGCGGACGGTCGACTTCCGCAACACGATCATCATCATGACGTCCAACGTCGGCGCCGATGCGCTGAAACG
GAATAAGTACGTTGGCTTCAACATTCAAGACGGGAACCAGCAATACAAAGATATGAAAAGCAAAGTGATGGATGAGCTGA
AAAAAGCATTCCGTCCAGAGTTTTTAAACCGGATCGACGAAATCATCGTCTTCCATTCGCTCGAAAAAGACCATCTGAAA
CAAATCGTCCGATTGATGGCCGATACGCTCGTGAAGCGGCTGAAAGAGCAAGACATTGATCTTGAGCTGACGGAGGCCGC
CATTGAGAAAATCGCCGCCGAAGGGTTCGATCCAGAATACGGTGCCCGCCCGTTGCGCCGCGCCTTGCAAAAGCATGTTG
AAGACCGTTTGTCCGAAGAATTGTTAAAAGGCACGATCGCCAAAGGGCAAAAAGTCGTTGTGGATGTCAAAGACGGGGAG
TTTGTCGTATTGTCGAAACAGGCGGTCGTGTGA

Protein sequence :
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLIREGEGIAAKALMALGLGPDKIQKEVESLIGRGSEVSHTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESMSGHGGGASHVST
PTLDSLARDLTAIAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY
RKYIEKDAALERRFQPIYVDEPTVEESIQILKGLRDRYEAHHRVSISDEAIEQAVKLSDRYITDRFLPDKAIDLIDEACS
KVRLRSFTAPPKLKELEQKLEEVRKEKDAAVQSQEFEKAASLRDMEQRLREELEETKRAWKEKQGQENLEVTVEDIAAVV
SSWTGIPVSKLAETETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEMEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTIIIMTSNVGADALKRNKYVGFNIQDGNQQYKDMKSKVMDELKKAFRPEFLNRIDEIIVFHSLEKDHLK
QIVRLMADTLVKRLKEQDIDLELTEAAIEKIAAEGFDPEYGARPLRRALQKHVEDRLSEELLKGTIAKGQKVVVDVKDGE
FVVLSKQAVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 59
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 8e-89 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC61_0079 YP_003251261.1 ATPase AAA VFG0079 Protein 0.0 79
GYMC61_0079 YP_003251261.1 ATPase AAA VFG0080 Protein 5e-141 53