Gene Information

Name : GYMC10_6155 (GYMC10_6155)
Accession : YP_003246167.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 6912710 - 6913585 bp
Length : 876 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afl:Aflv_1159 ferrichrome ABC transporter (ATP-binding protein)

DNA sequence : 
ATGATTCGCCTAAGTACAGATCGAATAAGCGTCGGTTATGGCGAGAATCTGATATTGAATCGTCTTAACGTAGATATTCC
CGATAAAAGAATCACGACCATCATTGGGCCTAATGGCTGCGGCAAATCCACTCTTTTGAAGGCTGTTACCCGCATCATTC
CTTATCAATCCGGTGCAGCCATTCTGGACGGGGAAGAAATCGCCAAGATGAACACCAAGCTGCTGGCGAAGAAGCTGGCC
ATTCTGCCCCAGACTCCGGAAGGTCCGGGCGGATTAACGGTGGGCGAACTCGTATCCTACGGGCGCTATCCCCATCAGCG
CGGTTTTGGCCGCTTGACCAAGCAGGATATGGACGTCATCGACTGGGCACTCGAGGTTACCGGCACCCAGGATTATAAAT
ACCGTTCGGTGGATGCCCTGTCCGGCGGACAGCGCCAGCGGGTATGGATTGCGATGGCACTCGCGCAGGAGACCGAAATG
ATCTTCCTCGACGAGCCGACCACGTATCTGGATATGGCGCATCAGCTGGAGATTCTGGAACTGCTCGAGAGGCTCAATAT
CGAACAAGAGCGGACCATCGTCATGGTTCTGCACGATTTGAACCAGGCTGCCCGATTCGCGGATTACATTATCGCAATGA
AGGATGGAGATATCATTCAGGCCGGCGATCCGGAAGCCGTCATTTCGCACGAAGTATTAAAGAAAGTATTCCATATCGAC
GCAGAGATCGGCCGCGATCCGCGCACGGCGAAGCCGATCTGCATCACTTATAATCTATTAAAAGGGGAAAAAGAGGACAT
ACTCAAAACGGCGGAGCATAACGACAACTACGACGAAGCTGCTCATCCCGTTTATCGTACTGCTGTTCATTCCTAG

Protein sequence : 
MIRLSTDRISVGYGENLILNRLNVDIPDKRITTIIGPNGCGKSTLLKAVTRIIPYQSGAAILDGEEIAKMNTKLLAKKLA
ILPQTPEGPGGLTVGELVSYGRYPHQRGFGRLTKQDMDVIDWALEVTGTQDYKYRSVDALSGGQRQRVWIAMALAQETEM
IFLDEPTTYLDMAHQLEILELLERLNIEQERTIVMVLHDLNQAARFADYIIAMKDGDIIQAGDPEAVISHEVLKKVFHID
AEIGRDPRTAKPICITYNLLKGEKEDILKTAEHNDNYDEAAHPVYRTAVHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-52 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-48 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-48 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-48 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-52 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-52 46
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-47 43
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-46 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_6155 YP_003246167.1 ABC transporter-like protein BAC0164 Protein 4e-47 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_6155 YP_003246167.1 ABC transporter-like protein VFG0925 Protein 1e-47 45
GYMC10_6155 YP_003246167.1 ABC transporter-like protein VFG1042 Protein 4e-47 43