Gene Information

Name : GYMC10_5104 (GYMC10_5104)
Accession : YP_003245123.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Resistance
Product : Cystathionine gamma-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : 4.4.1.1
Position : 5771977 - 5773170 bp
Length : 1194 bp
Strand : -
Note : PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pjd:Pjdr2_4797 cystathionine gamma-lyase

DNA sequence :
TTGGGAACGGAAACCAAGCAGGTATCAGTAAAACAGGGACACCAAGAAGAACTTCGTTTCGAGACGAAACTATTGCATTT
CGGCGGGGAAATCGACCGGGCAACCGGCGCCTCAAGCGTTCCGATCTATCAAGCCTCGACGTTTCATCATGAAGACGTCT
TTAACCCGCCACTGCACGATTACAGCCGTTCCGGCAATCCGACGCGACAGGCGCTGGAAGATTATATCGCCCTCTTGGAA
GGAGGCGTGCGCGGCTTCGCTTATGCTTCCGGCATGGCGGCGATCTCCAGCTCGTTCATGCTGCTGTCCGCAGGCGATCA
CATGATCGTGACGGAGGACGTATACGGCGGAACCTACCGCCTGCTGACCAGCATACTGAGCCGTATGGGCATCGAGAGCA
CCTTCGTCGACATGACCGATCTGGATCAGGTGAAGGCAGCCCTCAAACCGAATACCAAAGCGGTTTATATGGAAACCCCT
TCGAACCCGACCTTGAAAATTACCGACATCGGCGCCGTCACGGATTGGGCGAAGGAGCAAGGCCTGCTTACCCTGCTGGA
CAATACGTTCATGACGCCGTTCTATCAGCGCCCGATCGAGTTCGGCGTGGATATCGTCATCCACAGCGCAACCAAATTCC
TTGGCGGACACAGCGATGTGCTGGCAGGTCTCGCCGTAGCCAGAACCCAGGAGCTGGGAGACCAGTTGAAACAGCTGCAA
AATGGTTTGGGCACGGTGCTTGGGGTCCAGGATTCCTGGCTCCTTATGCGGGGCATGAAGACGCTTAGCACTCGGATGGC
CCACTCCGAGCAAAGCGCGGCCAAGCTGGCGGCCTGGCTGCAAGGGAGAAGCGACATAGAGCAAGTGTATTACCCCGGCC
TCTTGAATCATCCGGGACGGGAAGTCCATGAGAAGCAATCGAGCGGTTACGGCGCGGTCATCTCCTTTGACGTCGGCTCA
GGCGAGCGTGCGAAGCAGGTGCTGAACCGCGTGAAGCTGCCGCTGGTAGCCGTCAGCCTGGGAGCAGTGGAGAGCATCCT
GTCGTATCCGGCGATGATGTCCCATGCGGCCATGGGCGAGAAGGTTCGGCATGAGCGCGGCATTACCGACGGTTTGCTTC
GCTTCTCGGTCGGACTGGAGGATGTGGATGACCTGATTGCCGATTTGGACCAGGCCTTTTCTGCCAGCAACTAA

Protein sequence :
MGTETKQVSVKQGHQEELRFETKLLHFGGEIDRATGASSVPIYQASTFHHEDVFNPPLHDYSRSGNPTRQALEDYIALLE
GGVRGFAYASGMAAISSSFMLLSAGDHMIVTEDVYGGTYRLLTSILSRMGIESTFVDMTDLDQVKAALKPNTKAVYMETP
SNPTLKITDIGAVTDWAKEQGLLTLLDNTFMTPFYQRPIEFGVDIVIHSATKFLGGHSDVLAGLAVARTQELGDQLKQLQ
NGLGTVLGVQDSWLLMRGMKTLSTRMAHSEQSAAKLAAWLQGRSDIEQVYYPGLLNHPGREVHEKQSSGYGAVISFDVGS
GERAKQVLNRVKLPLVAVSLGAVESILSYPAMMSHAAMGEKVRHERGITDGLLRFSVGLEDVDDLIADLDQAFSASN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-89 51
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-85 49
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-86 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_5104 YP_003245123.1 Cystathionine gamma-lyase BAC0207 Protein 1e-56 41