Gene Information

Name : GYMC10_4175 (GYMC10_4175)
Accession : YP_003244209.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4756989 - 4757741 bp
Length : 753 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: pjd:Pjdr2_3440 flagellar biosynthetic protein FliP

DNA sequence : 
ATGAATAAAAAGATCTCGTACGCTATCACGATTTTCATCATGTTTGGATTATTGTTTTCCCATACGGCATTCGCGGATCC
GATTCCGAACATTGATATTCAAATCGGCAATGAGGGAGATGCACCGGGGACAAGCTCTTTGTCCTTGATACTCCTGATCA
CCATTCTTAGTATTGCACCGGCGATTCTGGTGCTGATGACAAGTTTTACAAGGATTGTTATCGTGCTCGGCTTTGTCCGT
ACTTCGCTCGGAACACAGCAAACACCGCCAAACCAAGTGTTGATCGGCCTGGCGCTGTTCCTTACCTTGTTCGTTATGGC
TCCCACGTTGTCCTCGATGAACGAGGTCGCGCTGCAGCCCTACCTCAAAGGGGAGATCACTCAAGCGGAAGCGCTGGATA
AGGCTCAAGACCCGATGAAGAAGTTCATGTTCGCGCACACAAGGGAAAAGGACCTGCTGCTGTTCATGAATTACACAGGC
GCGGAGAAACCCGAATCCTACGAGGACATTCCATTAACGGTTTTAGTTCCGGCATTTGCCATTAGCGAGCTGAAGACGGG
TTTCCAAATGGGTTTTATGATCTTCATCCCGTTTCTGGTCATCGATATCGTGGTTGCCAGCGTGCTGATGGCAATGGGGA
TGATGATGCTGCCGCCGGTCATGATCTCGCTGCCATTCAAGATTCTGCTCTTTGTTTTGGTGGACGGCTGGTATCTGGTA
GTGAAATCCATGCTGATGAGCTTTAACCCGTAG

Protein sequence : 
MNKKISYAITIFIMFGLLFSHTAFADPIPNIDIQIGNEGDAPGTSSLSLILLITILSIAPAILVLMTSFTRIVIVLGFVR
TSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVALQPYLKGEITQAEALDKAQDPMKKFMFAHTREKDLLLFMNYTG
AEKPESYEDIPLTVLVPAFAISELKTGFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLV
VKSMLMSFNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-20 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-20 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_4175 YP_003244209.1 flagellar biosynthetic protein FliP VFG1259 Protein 8e-46 62
GYMC10_4175 YP_003244209.1 flagellar biosynthetic protein FliP VFG2016 Protein 3e-42 57
GYMC10_4175 YP_003244209.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-42 57
GYMC10_4175 YP_003244209.1 flagellar biosynthetic protein FliP VFG2338 Protein 4e-39 55