Gene Information

Name : GYMC10_3696 (GYMC10_3696)
Accession : YP_003243738.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4263923 - 4264615 bp
Length : 693 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pjd:Pjdr2_3010 two component transcriptional regulator, winged helix family

DNA sequence :
ATGAAAACCATATTAATCGTGGATGATGAACCGAATATTCGAGAAGTTCTTGTATCTTATTTGAACAAAGAACGTTACTT
GACGCTGGAAGCGGCGAACGGTGCCGAGGCATTCGATTGCCTGCGAGGACAAGCCGTGGACCTTGTCCTATTGGACCTCA
TGCTGCCGGATATGGACGGTGAACGGATATGCAAGGAAATTCGAACGTTTAGCTCGGTCCCCATCGTGATGTTAACGGCT
AAGGTGGCTCAGAGCAGCCGGATTGGCGGATTTGCGATCGGAGCCGATGATTACATCGTGAAGCCGTTCGACCCTCGGGA
AGTCGTGGCAAGGATCAAGGCTGTCTTGAGGCGGGGGGATGACTGCAAGCTGCTCGCGGACGTCATTGTGTATGATGAAG
GCGCATTGGTCATCCATTCCATGAAGCATGAGGTCACCAGCCATGGACAAATCGTGAATTTGACGCCGAGCGAATATAAA
CTGCTGCTGCTGTTGGCCAAATACCCGCAGCGGAACTTCTCTCGCGAGGAACTGGTCGACCGGGTATTAGGCTACGATTT
TATCGGCGACATCCGCATCATCGATCAGCATATAAAGAATCTGCGTCAAAAGATTGAATCCGACCCAAAGCAGCCGAAAT
ATATCCTCACCGTTTACGGATTCGGCTATCGCTTCGGAGGTGACGGGGCTTGA

Protein sequence :
MKTILIVDDEPNIREVLVSYLNKERYLTLEAANGAEAFDCLRGQAVDLVLLDLMLPDMDGERICKEIRTFSSVPIVMLTA
KVAQSSRIGGFAIGADDYIVKPFDPREVVARIKAVLRRGDDCKLLADVIVYDEGALVIHSMKHEVTSHGQIVNLTPSEYK
LLLLLAKYPQRNFSREELVDRVLGYDFIGDIRIIDQHIKNLRQKIESDPKQPKYILTVYGFGYRFGGDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_002695.1.916589.p Protein 4e-38 45
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator CP001138.1.gene2239. Protein 2e-36 45
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator BAC0039 Protein 5e-38 45
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator BAC0596 Protein 2e-36 45
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator CP000034.1.gene2186. Protein 5e-38 45
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 2e-33 44
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator CP001918.1.gene3444. Protein 1e-38 44
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator CP004022.1.gene1676. Protein 3e-33 43
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 2e-35 43
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator CP000647.1.gene2531. Protein 3e-37 43
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-29 43
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-32 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 9e-34 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 8e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 9e-33 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-32 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 9e-30 42
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator DQ212986.1.gene4.p01 Protein 5e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_3696 YP_003243738.1 winged helix family two component transcriptional regulator VFG1563 Protein 2e-29 42