Gene Information

Name : GYMC10_2801 (GYMC10_2801)
Accession : YP_003242879.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 3203005 - 3203805 bp
Length : 801 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU32940 hypothetical protein

DNA sequence : 
TTGACAACGCTGCAAGTAAAAGAGCTGACCGTAGGGTATGGGCCCAAGACGGTAATCAAGGATATGAACCTGATGATTCC
TGAAGGAAAAATAACCGTATTCATTGGTGGAAACGGGTGCGGAAAATCGACTTTACTGCGCACGCTTGCCCGATTGCAGA
AGCCTGACACCGGCGCGGTTTTGCTGGATGGCAGGCAAATTGCCCAGATGTCGACCAAAGAGGTGGCCAAGAGCTTGTCC
ATATTGCCTCAGGGTCCATCGGCGCCGGAAGGCCTTACTGTCCGTCAATTGGTTCGCCAGGGAAGATACCCGCATCAGAG
CTGGTTGAAGCAGTGGTCACCAGTTGATGAAGAGATGGTGAACGTTGCATTAAAGTCTACCCGCGTGGAAGCTTTTGCCG
ATCAGACCGTGGACTCCCTCTCCGGTGGCCAGAGGCAGCGAGCGTGGATTGCCATGACCCTGGCTCAAGGAACCGGTATG
CTGCTGCTCGACGAACCGACGACATATCTGGACCTGTCCCATCAGGTAGAGATATTGGATATGCTGTATGAACTGAATGA
GCGGGATCAGCGCACCATCGTCATGGTGCTGCATGACCTGAATTTAGCTTGCCGTTATGCACACTACATGGTGGCTGTAA
GCGAGGGGAATATTTATGCGTTCGGAGCACCTGAGGAAATCGTGACGCCGGAAACTGTTAAAGACGTCTTCCAATTGGAT
TGCAAGGTCATACCAGATCCCTTGTTCGGCACGCCGCTGTGTATCCCTAGGGGAAAGGGTAGAATTATCGGGCAGTTTTA
A

Protein sequence : 
MTTLQVKELTVGYGPKTVIKDMNLMIPEGKITVFIGGNGCGKSTLLRTLARLQKPDTGAVLLDGRQIAQMSTKEVAKSLS
ILPQGPSAPEGLTVRQLVRQGRYPHQSWLKQWSPVDEEMVNVALKSTRVEAFADQTVDSLSGGQRQRAWIAMTLAQGTGM
LLLDEPTTYLDLSHQVEILDMLYELNERDQRTIVMVLHDLNLACRYAHYMVAVSEGNIYAFGAPEEIVTPETVKDVFQLD
CKVIPDPLFGTPLCIPRGKGRIIGQF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-60 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-60 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-61 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-54 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-48 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-48 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-48 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-48 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-50 44
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-56 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-56 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-55 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-55 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_2801 YP_003242879.1 ABC transporter-like protein BAC0164 Protein 2e-54 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_2801 YP_003242879.1 ABC transporter-like protein VFG0925 Protein 2e-62 52
GYMC10_2801 YP_003242879.1 ABC transporter-like protein VFG1042 Protein 2e-54 46