Gene Information

Name : GYMC10_2036 (GYMC10_2036)
Accession : YP_003242124.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 2379458 - 2380771 bp
Length : 1314 bp
Strand : +
Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: bbe:BBR47_57510 hypothetical protein

DNA sequence : 
ATGGAATTATATGAAAACATGCTGGACCGCGTGAATAAATTGGCGGTCGTCGGACTGGGTTATGTCGGCCTGCCGCTGGC
GGTCGCGTTCTCGAAAAGGCTGGATGTCATCGGCTTTGATCTGAGCGAGGCGAAGGTGTCTCAGTATCGCAGCGGATTCG
ATGCTACCGGTGAGATCGGAGATGACTTGCTTGCGGGCTGTGCGGCCGATTTCACCTCGGATCCGGACAAGCTGAAGGAG
GCTCGCTGCTTTATCGTGGCCGTTCCGACACCCGTAAAAAGCGGCAATGTGCCGGACCTGAAATTCGTGCGGAATGCCAG
CCGTTTGGTCGGTCGCGCCTTGACGCGGGGAGCGGTGGTTGTCTATGAGTCAACGGTCTATCCGGGCGTTACGGAGGAAG
TCTGCATTCCGATTCTCGAAGAGGAGTCGGGCCTGCGGCTGGGCGAGGATTTCAAGGTGGGGTATTCTCCGGAACGGATT
AACCCCGGAGACCAGGTCCACCGGCTGGAGACCATCGTGAAAATCGTGTCCGGCAATGATCCGGAGGCGCTGGAGACGGT
TGCCAGACTGTATGAGCTGATTATCGAGGCAGGCGTTCACCGGGCGGAATCCATCCGGGTGGCGGAAGCGGCAAAGGTCA
TCGAGAATGCGCAGCGCGACATCAACATTGCCTTTATGAACGAGCTTTCGATGCTGTTCAACCAGATGGACATCGATACG
AATGCCGTGCTGCGCGCAGCGGAAACGAAATGGAATTTCCTCCCGTTCCGCCCTGGTCTCGTCGGCGGGCATTGCATCGG
AATCGACCCGTATTATCTGACGTATAAGGCCGAGGATACGGGGTATCATTCCAAGATTATTTTGGCAGGTCGGCATATCA
ATGACGGAATGGGAAAATACGTCGCCCAGCACGTCATTAAACTTGCGATTCGCCAAGGGATCGATCTGATGAAGGCGAAG
GTGGCCGTCATGGGCCTTTCGTTCAAGGAGGACTGCCGGGATATCCGCAATTCCAAGGTCATCGATATTATTCGGGAGCT
GCAGGATTACGGAATCCGGCCGATGGTGGCGGACCCGCACGTAGACCCGAAGCAGGCTTACGAGGAATACGGCATCGAGC
TGTCGGACATGAGCGAGCTGAGCGGAATCCAGATTGCGGTTGTGGCGGTCGCTCACCGGGAGTTCAAGCAGCTCGGGATC
GCGGCATTCAAGGAGATGTTCAGTTCGGAACAGGCGAAGCTTCTGATCGACGTGAAGGGAGCTTATCCAAAAACCGAATG
CGAAGCCCATGGCTTTCATTATTGGAGTTTGTAA

Protein sequence : 
MELYENMLDRVNKLAVVGLGYVGLPLAVAFSKRLDVIGFDLSEAKVSQYRSGFDATGEIGDDLLAGCAADFTSDPDKLKE
ARCFIVAVPTPVKSGNVPDLKFVRNASRLVGRALTRGAVVVYESTVYPGVTEEVCIPILEEESGLRLGEDFKVGYSPERI
NPGDQVHRLETIVKIVSGNDPEALETVARLYELIIEAGVHRAESIRVAEAAKVIENAQRDINIAFMNELSMLFNQMDIDT
NAVLRAAETKWNFLPFRPGLVGGHCIGIDPYYLTYKAEDTGYHSKIILAGRHINDGMGKYVAQHVIKLAIRQGIDLMKAK
VAVMGLSFKEDCRDIRNSKVIDIIRELQDYGIRPMVADPHVDPKQAYEEYGIELSDMSELSGIQIAVVAVAHREFKQLGI
AAFKEMFSSEQAKLLIDVKGAYPKTECEAHGFHYWSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 5e-104 54
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-96 50
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-96 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_2036 YP_003242124.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-96 50