Gene Information

Name : GYMC10_1340 (GYMC10_1340)
Accession : YP_003241433.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1587928 - 1588629 bp
Length : 702 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe1178 ABC transporter, ATP-binding protein

DNA sequence : 
ATGGCTTTTGTGAGCATTAAGGATGGATATAAGCGCTATCGGATGGGCGAGACCACCATTGTAGCCAACGACGGAATCAA
CCTGGAGATCGAAAAGGGCGAGTTCGCGATTATCGTCGGTCCCAGCGGCGCAGGAAAATCCACGGTGCTGAACATATTGG
GCGGCATGGACACCGCCGATGAGGGACAAGTGCTGGTGGATGGAACGGACATAGCCAAGTTTAACAGCAAGGAGCTGACG
GGATATCGGCGCAATGACGTCGGATTTGTGTTCCAATTTTACAACCTGGTTCCCAATCTGACGACAAAAGAAAACGTGGA
ATTAGCCTCGCAGATTTCGCCCCGAGCTCTGGATGCCGAACAAGTGCTGCGGGATGTCGGCCTGGAGCAGCGCCTGAACA
ATTTTCCGGCACAGCTGTCCGGCGGCGAACAGCAGCGGGTGGCGATTGCCAGGGCGCTTGCCAAGCAGCCGAAGCTGCTT
CTCTGCGATGAACCCACGGGTGCGCTTGATTACCATACCGGGAAGCAGGTGCTCAAGCTGCTCCAGGATACCTGCCGCCA
CACGGGAACGACCGTTATCGTCATTACGCATAATTCTGCCCTGGCACCGATGGCCGATCGCATCATCGAGATCAACAATG
CCAAGGTTCGGAAGACGGTGGTAAATCCGAATCCCGTTTCCGTAGACAGCATTGAGTGGTAG

Protein sequence : 
MAFVSIKDGYKRYRMGETTIVANDGINLEIEKGEFAIIVGPSGAGKSTVLNILGGMDTADEGQVLVDGTDIAKFNSKELT
GYRRNDVGFVFQFYNLVPNLTTKENVELASQISPRALDAEQVLRDVGLEQRLNNFPAQLSGGEQQRVAIARALAKQPKLL
LCDEPTGALDYHTGKQVLKLLQDTCRHTGTTVIVITHNSALAPMADRIIEINNAKVRKTVVNPNPVSVDSIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-35 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-35 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_1340 YP_003241433.1 ABC transporter-like protein NC_012469.1.7685735. Protein 1e-77 68
GYMC10_1340 YP_003241433.1 ABC transporter-like protein CP001581.1.gene598.p Protein 4e-41 44
GYMC10_1340 YP_003241433.1 ABC transporter-like protein NC_008702.1.4606598. Protein 7e-36 42
GYMC10_1340 YP_003241433.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-37 42
GYMC10_1340 YP_003241433.1 ABC transporter-like protein CP001581.1.gene798.p Protein 7e-40 41