Gene Information

Name : GYMC10_1220 (GYMC10_1220)
Accession : YP_003241316.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 1438498 - 1438695 bp
Length : 198 bp
Strand : -
Note : PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cbb:CLD_0298 hypothetical protein

DNA sequence : 
ATGAAAAACATCAAATTGAAGATGGCCCGCGTCGAAAAGGATTTATCGCAGGAAGAACTGGCCCAGATCGTCGGTGTCTC
CAGGCAGACCATCGGCCTGATCGAGCTGGGGAAATATAATCCGTCCCTCAGCCTGTGCGTTGCCATATGCAAGGCATTAT
CGCGTACGCTGAACGATCTGTTCTGGGAAGAAGACTAG

Protein sequence : 
MKNIKLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLFWEED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 3e-07 49
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 2e-07 49
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 4e-06 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_1220 YP_003241316.1 XRE family transcriptional regulator VFG2168 Protein 9e-08 49
GYMC10_1220 YP_003241316.1 XRE family transcriptional regulator VFG2175 Protein 9e-08 49