Gene Information

Name : GYMC10_0097 (GYMC10_0097)
Accession : YP_003240213.1
Strain : Paenibacillus sp. Y412MC10
Genome accession: NC_013406
Putative virulence/resistance : Resistance
Product : heavy metal translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 108251 - 110512 bp
Length : 2262 bp
Strand : -
Note : TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pjd:Pj

DNA sequence :
ATGAGCACGGACAACCATCAGCAATCCAAAACATCTCCTGAAGCAGGTGGCAGCAAACTTGTTGAATACAAGGTCCAGGG
CCTCTCGTGCCCGAACTGCACCCGTGAAATGCAGGAGGAGATCCAGAAGCTCGACCATGGAAGCGACGCCCGGCTGAGTT
ATAACAGCGGAAAGCTGACCCTTTCCCCCCAGGTGAACCTAAACCGGGTAGAAACCATTTTGAAAAGTGATGGCGCCCGT
ATCGTTCATGCCCCGCAAACAGCCCTTTCGGCTGCCGGCGCTGATGTTCGGCCCGCCTCTTCGTCGCACGCTCATGGTGC
GTCAGAAGAACACGACCACGGACAAAGCCATGAACATGGACATGGACACAGCCATGGCAGCGAACGAAAAATGAAGTGGC
TGCTGTCCATCTCGGCTGCGTTTTATCTGCTGACTTTTCTATTAGAAGGGAACGCCGCCGAGTCGGTTGTGATCGCATTA
TATGCAGGTGCCATGATATTGAGCGGGTATACGACGTTTTTGCGCGGACTGCGTAACCTGACCCGCTTCAAATTCAATAT
GGATACCCTGATGACCGTTGCGCTCGTAGGTGCCGTCATCATCGGGGAGTGGCGGGAAGCCACGCTCGTTGCCATTCTCT
TCGGCCTCAATGAGCTGCTGGAAGGCTACGGCATGAACCGTGCCCGCCAATCCATGGAAGCGCTGCTGGCCGCAGCGCCG
AAGGAAGCCGAGCTTTGGGTAGACGGCCAAACCAAACGCGTGCCGATCGAGAGCCTCTCTCCCGGAGACGTTGTCCGGGT
AAGACCTGGCGAGAAAATTCCTTCGGACGGAGCCATAACCCAGGGAACCGGCGCGGTGAACGAAGCTGCCATAACCGGAG
AATCGGTGCCTGTTACGAAACGGGAGGGCGACGCCGTATTTGGCGGCAGCGTAAGTACCGACGGCGTGCTCTATATCGCC
ATATCGAAGGCTTATCAGGATTCCTCCCTGGCCAAGATCATGCATCTTGTGCAGGAGGCGCAGGACAGCAAGACGCCGAC
GGAGCTATTCATCGATAAATTTGCTAAATACTATACGCCAGCCATTATGATCATCGCATTGGCTGTTGCGCTGATTCCTC
CGTTGCTGCTGAATCAGCCCTGGATGACCTGGGTTTACCAGGGGCTGTCCATTCTCATTGTCGGGTGTCCTTGCTCGCTC
GTGCTCTCTTCGCCGATAGCGCTGGTTAGCGGGATGACCCGCGCGGCACGCAACGGCATTCTAATTAAAGGCGGAGTCCA
TCTGGAGCAGCTCGGACGCCTGGAAGCCGTCGCTTTCGACAAGACGGGAACCCTGACCAAGGGCGAGCCGGCCGTCTACG
CGGAAACCGTATATGATGAGGATAAATTTTATGCCGTGGTAGGCGCGCTGGAGCAATCCTCGCTCCATCCGTTGGCCAAA
GCCGTCATGAAACATCTGGAGATCAAGCAGCCGCATTGCATGTTTAATGAACCTCAACAGATTACGGTGCTGCCGGGTGA
AGGCATTCAGGCTGAAATCGGAGGGAAGCTGTTCTGGGTGGGCAGCGAGGAAGTGCTGAAGCATGTGAGCGGCCCTCAAG
ATCATATCCGTGCCGTTGAGGATGACATTCGGAGAATGAAGGCCCAGGGGTACACGATCGTTGCCGCCGTAAGCGAGGAG
CGCGTATTAGGTCAATTCGGTCTTGCCGATGAGATTAGGCCGGAGACCGCAGCCGTTGTCCGCAAGCTTCACGAGGCTGG
AATCACGGATACGGTGATGCTGACGGGCGACCATGAGCAGTCGGCGCAGGCGATCGCGAAACAATCCGGCGTATCGCGGG
TGTTCGCAAGCCTGCTGCCGGAACAGAAGGTTGCCAAAATCAAGGAGCTTAGCTCCCGCAAAAAGACCGGCATGGTCGGC
GATGGCATTAACGACGCCCCTGCATTGGCCGCTGCCGATCTGGGCATCGCAATGGGAAAAGGAACGGACAGCGCCATCGA
AACCGCCGACATCGTATTGATGCAGGATCACCTTGGTAAGCTGCCCGGAGCCATCAAGACGGCAAGACGAGTCAACCGGA
TTATTAAATGGAACATCGGACTTTCCTTGTCGCTGAAGGCCATCGCTCTGCTGCTAACGATTCCGGGCTGGCTGACCCTA
TGGATCGCGATCATATCGGACATGGGGGCCACCATTATCGTAACCTTGCTGGGTCTCACCATTCTGCTTGGCAAGGATCA
GGAGCTGCAATCAGGACATTGA

Protein sequence :
MSTDNHQQSKTSPEAGGSKLVEYKVQGLSCPNCTREMQEEIQKLDHGSDARLSYNSGKLTLSPQVNLNRVETILKSDGAR
IVHAPQTALSAAGADVRPASSSHAHGASEEHDHGQSHEHGHGHSHGSERKMKWLLSISAAFYLLTFLLEGNAAESVVIAL
YAGAMILSGYTTFLRGLRNLTRFKFNMDTLMTVALVGAVIIGEWREATLVAILFGLNELLEGYGMNRARQSMEALLAAAP
KEAELWVDGQTKRVPIESLSPGDVVRVRPGEKIPSDGAITQGTGAVNEAAITGESVPVTKREGDAVFGGSVSTDGVLYIA
ISKAYQDSSLAKIMHLVQEAQDSKTPTELFIDKFAKYYTPAIMIIALAVALIPPLLLNQPWMTWVYQGLSILIVGCPCSL
VLSSPIALVSGMTRAARNGILIKGGVHLEQLGRLEAVAFDKTGTLTKGEPAVYAETVYDEDKFYAVVGALEQSSLHPLAK
AVMKHLEIKQPHCMFNEPQQITVLPGEGIQAEIGGKLFWVGSEEVLKHVSGPQDHIRAVEDDIRRMKAQGYTIVAAVSEE
RVLGQFGLADEIRPETAAVVRKLHEAGITDTVMLTGDHEQSAQAIAKQSGVSRVFASLLPEQKVAKIKELSSRKKTGMVG
DGINDAPALAAADLGIAMGKGTDSAIETADIVLMQDHLGKLPGAIKTARRVNRIIKWNIGLSLSLKAIALLLTIPGWLTL
WIAIISDMGATIIVTLLGLTILLGKDQELQSGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cadA BAC57487.1 Probable cadmium-transporting ATPase (Cadmium efflux ATPase) Not tested Type-IIIinv SCCmec Protein 8e-119 42
unnamed BAB47609.1 cadmium resistance protein B Not tested Type-III SCCmec Protein 7e-119 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYMC10_0097 YP_003240213.1 heavy metal translocating P-type ATPase BAC0298 Protein 7e-80 41