Gene Information

Name : Adeg_1541 (Adeg_1541)
Accession : YP_003239486.1
Strain : Ammonifex degensii KC4
Genome accession: NC_013385
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1535098 - 1535796 bp
Length : 699 bp
Strand : -
Note : TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; helix-hairpin-helix motif; KEGG: gur:Gura_4138 DNA repair protein RadC

DNA sequence : 
ATGAAAGAAGAGAAGACTTACCGGGTTTCCATAAAGGAGCTCCCTCCCTCAACCCGCCCGCGCGAGCGTCTTTGGCGGGA
AGGGGCGTCTGCTCTTTCTGAGGTGGAACTCTTGGCCATCATCCTGCGTACCGGCTCGGCCAGAGGCTCGGCCCTGGACC
TGGCCCGGTTTCTCCTGGCCAATTTTGGGGGACTTAAAGGGCTGGCTACGACGGCGGTACAGGAATTAAGTTCGGTTCCG
GGCATGGGGGAGGCAAAGGCGGCGCAGGTGGCTGCTGCTCTAGAGTTGGGCCGGAGGTTAGGGACCTTGGAGGTTTCTTC
ACGGCCGGTAATAAATTCTCCGGCCGCCGCGGCGCAACTGGTAGTGCCTACTATGGCCCATCTAGAGCAAGAGGAGTTTA
GGGTGATACTGCTGGATACCAAGAATCAGTTGCTGGGGATAGAAACCGTGGCCGTAGGTGGGCTTAACAGCGCTGGGGTC
TTGCCCCGCGAGGTCTTTCGGGCGGCGGTGCGCCGTTCGGCCTGTGCCCTGATTTTGGTGCACAACCACCCAAGTGGCGA
CCCTACGCCCAGCGGGGAAGACCTGGCTCTTACCCGGCGCCTGGTGCAGGCGGGGGATCTCTTGGGCATTGAGGTGCTGG
ATCACCTCATCATAGGCGATAATTGCTATGTGAGCCTCAAAGAGGCAAATCTCTGGTGA

Protein sequence : 
MKEEKTYRVSIKELPPSTRPRERLWREGASALSEVELLAIILRTGSARGSALDLARFLLANFGGLKGLATTAVQELSSVP
GMGEAKAAQVAAALELGRRLGTLEVSSRPVINSPAAAAQLVVPTMAHLEQEEFRVILLDTKNQLLGIETVAVGGLNSAGV
LPREVFRAAVRRSACALILVHNHPSGDPTPSGEDLALTRRLVQAGDLLGIEVLDHLIIGDNCYVSLKEANLW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08475.1 unknown Not tested SRL Protein 5e-16 42
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-15 41
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-15 41
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Adeg_1541 YP_003239486.1 DNA repair protein RadC VFG1066 Protein 3e-16 42
Adeg_1541 YP_003239486.1 DNA repair protein RadC VFG0660 Protein 1e-15 41