Gene Information

Name : sepQ (ECO111_3749)
Accession : YP_003236085.1
Strain : Escherichia coli 11128
Genome accession: NC_013364
Putative virulence/resistance : Virulence
Product : T3SS structure protein SepQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 3735435 - 3736352 bp
Length : 918 bp
Strand : -
Note : Integrative element ECO111_IE05

DNA sequence : 
ATGAAACCATTGAGTTCACAATTGAATATGAAAATTAACGATTTTTATTTGCCATTGTTGCCAGTCATCGGAACCGGTCG
CCTCTATATTACGTCCGAAGGTCATGCGTGCCATGCATATTTTCGTGAAGTCAGCGGTCATGGTATTCGTTTCACGTTGA
CATACTCGGGCTATGAGGGGCGTTTTTGGATATCAGAAGAACAGTTCATTCAGTGGTGCCAGGAGTTATTCCCGTATAGC
GAAAGCCGGCTGATACCGGAAGATACGATAAAACTCATGATCTTATGGGTAATGCAGACTGCCTTACCGGAAGGTGATGT
GTCAGTTGATGATGTTCAATTTACGATGCTAAATAAAGATGTTTATCCGGTAATAGAAAATAATAATGGAAAAAACAGAC
TTAATGTAATTATACTCGAAACAACGGTACAAAGTTTACAATATCTGATTAATGATAATTGGCAATTTGTTCCACATTCT
AATACGCTTTTTTTTGATGGCTATATCGTACCTGGGTGGACTGATTATCCGGTTACAGAGTTGAGAGTTGGTGATAGTCT
GAGACTCTATCATGTTGATGATAGTCAAGAGAGAAGGTGTTGGCTTGTTATTAATAACCCTTTGGCAACCGTAAAGTTGA
GCGATAATAACTTATCTATTACGGATGTTCAGGCCGCAGATCCGTTATGTACTATCAGCAGTGAGACTGTAATGAATCGC
ATTTATTGTGCGATTGGCACAATAAATGTTGATATACATATGTTGCGTAATGTCCAAAAAGATGACATTATCGATTCAAC
GGGATATCATCTTTTGGGTGGGTGCCAGTTAGTACGGAATAATATCACAATAGCATACGGAAGTATTATAAAAATCAACG
AAGATTTTTATTTTACTATTAGCGTAGTATGTGATTAA

Protein sequence : 
MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSEGHACHAYFREVSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYS
ESRLIPEDTIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGKNRLNVIILETTVQSLQYLINDNWQFVPHS
NTLFFDGYIVPGWTDYPVTELRVGDSLRLYHVDDSQERRCWLVINNPLATVKLSDNNLSITDVQAADPLCTISSETVMNR
IYCAIGTINVDIHMLRNVQKDDIIDSTGYHLLGGCQLVRNNITIAYGSIIKINEDFYFTISVVCD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sepQ YP_003236085.1 T3SS structure protein SepQ Virulence LEE Protein 8e-142 100
sepQ AAC38386.1 SepQ Virulence LEE Protein 2e-137 96
sepQ AAC31510.1 L0031 Virulence LEE Protein 4e-134 92
sepQ NP_290265.1 hypothetical protein Virulence LEE Protein 5e-134 92
sepQ ACU09455.1 SepQ protein Virulence LEE Protein 4e-134 92
ECs4565 NP_312592.1 SepQ Virulence LEE Protein 5e-134 92
sepQ AAK26718.1 SepQ Virulence LEE Protein 7e-128 89
sepQ AAL57545.1 SepQ Virulence LEE Protein 7e-128 89
sepQ CAC81865.1 SepQ protein Not tested LEE II Protein 3e-129 89
sepQ YP_003223472.1 T3SS structure protein SepQ Virulence LEE Protein 4e-129 89
sepQ CAI43871.1 SepQ protein Virulence LEE Protein 3e-129 89
sepQ YP_003232156.1 T3SS structure protein SepQ Virulence LEE Protein 4e-129 89
unnamed AAL06372.1 SepQ Virulence LEE Protein 2e-124 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepQ YP_003236085.1 T3SS structure protein SepQ VFG0733 Protein 9e-138 96
sepQ YP_003236085.1 T3SS structure protein SepQ VFG0809 Protein 2e-134 92