|
Name : tir (ECO111_3745) Accession : YP_003236081.1 Strain : Escherichia coli 11128 Genome accession: NC_013364 Putative virulence/resistance : Virulence Product : putative translocated intimin receptor Tir Function : - COG functional category : - COG ID : - EC number : - Position : 3731500 - 3733155 bp Length : 1656 bp Strand : - Note : Integrative element ECO111_IE05 DNA sequence : ATGCCTATTGGTAACCTTGGTAATAATGTAAATAGCAATAATTTAATTCCGCCTGCGCCGCCACTACCTTCACAAACAGA CGGCGCGTCACGGGGAGGAGCGGGTCAACTAATTAACTCTACAGGAGCATTAGGATCTCGTTTATTGTTTTCTCCCCTGA GAAATTCTATAGCTGATTCTGTCGATTCCAGAGATATTCCAGGACTTCCTGTACACCCATCGAGGCTTGCTACTGCTACA TCAGAGATATGCTTGCTTGGAGGATTTGAAGTTCTCCATGATAAGGGACCACTTGATACTCTCAATAAGCAAATTGGAGC CTCTGCATTTCGTATTGAACAGCAGTCAGATGGTTCTTATGCCGCTATTGGAGAAAAAAATGGTGTAGAGGTTAGCGTTA TATTAAATTCTCAAGAATTGCAAAGCTTGCAAGCTATCGATATTGAGGATAAAGGCCGATTTGTTTTTACCGGGGGACGT GGTGGTGGTGGGCATTCCATGGTCACTCCTGCATCAGATATCGCAGAAGCTCGTGCGAAAATACTGGCCAAATTAGACCC AAACAATCATGGGGGAAGTCAAGCCAGGAACGTTGATACGCGTTCTGTTGGTGTTGGAAGTGCTTCGGGAATGGATGATA GCGTTGTTAGCGAAACTCGTACTTCATCAACAGCTTCCAGCGTTCGTTCAGATCCTAAATTCTGGGTTTCTATCGGCGCA ATTGCTGCTGGTTTAGCGGGGCTGGCGGCTACTGGTATTACACAGGCGTTGGCTTTGACACCGGAACCGGATGATCCTAC AACCACCGATCCTGAGCAGGCTGCAAGTGCTGCAGAAAGTGCGACAAGAGATCAGTTAACGCAAGAAGCATTCAAGAATC CTGAGAACCAGAAAGTTAGCATTGATGAGATCGGAAATTCTATTCCGTCTGGGGAATTAAAAGATGATGTTGTTGCTAAA ATAGAAGAACAAGCTAAAGAGGCGGGTGAGGCGGCCAGACAGCAGGCTGTTGAAAGCAATGCACAGGCGCAGCAGCGATA TGATACTCAGTATGCCAGACGTCAGGAGGAATTAGAGCTTTCATCGGGTATTGGTTACAGCCTCAGCAGTGCATTGATTG TTGGTGGGGGAATTGGTGCTGGTGTAACGACTGCGCTTCATAGACGAAATCAGCCGGCAGAACAAACAACGACAACAACA ACACATACGGTAGTGCAGCAGCAGACCGGAGGGAATACCCCAGCACAAGGTGGCACTGATGCCATAAGAGCGGAAGACAC ATCTCTGAATAGACGTGATTCGCAGAGGAGTACGGCATCGACACACTGGTCAGATACTTCTAGCGCAGTGGTTAATCCAT ATGCTGAAGTTGGGGAGGCTCGGAATAGTTCACCGGCTCGTCAGGCAGAAGAGCATATTTACGATGAGGTCGCTGCAGAT CCTAATTATAGCGTCATTCAAAATTTCTCAGGGAATAACCAAGTTACCGGAAGGTTAATGGGAACTCCAGGGCAAGGTAT CCAAAGTACTTATGCGATTCTGACAAACAACAGCGCTGGATTGCGTTTAGGTATGGGTGGATTAACGGGGAGTGGCGGGA GCGCAGTAAATACTGCAAATGCCGCACCAACGCCGGGACCAGGACGTTTCGTTTAA Protein sequence : MPIGNLGNNVNSNNLIPPAPPLPSQTDGASRGGAGQLINSTGALGSRLLFSPLRNSIADSVDSRDIPGLPVHPSRLATAT SEICLLGGFEVLHDKGPLDTLNKQIGASAFRIEQQSDGSYAAIGEKNGVEVSVILNSQELQSLQAIDIEDKGRFVFTGGR GGGGHSMVTPASDIAEARAKILAKLDPNNHGGSQARNVDTRSVGVGSASGMDDSVVSETRTSSTASSVRSDPKFWVSIGA IAAGLAGLAATGITQALALTPEPDDPTTTDPEQAASAAESATRDQLTQEAFKNPENQKVSIDEIGNSIPSGELKDDVVAK IEEQAKEAGEAARQQAVESNAQAQQRYDTQYARRQEELELSSGIGYSLSSALIVGGGIGAGVTTALHRRNQPAEQTTTTT THTVVQQQTGGNTPAQGGTDAIRAEDTSLNRRDSQRSTASTHWSDTSSAVVNPYAEVGEARNSSPARQAEEHIYDEVAAD PNYSVIQNFSGNNQVTGRLMGTPGQGIQSTYAILTNNSAGLRLGMGGLTGSGGSAVNTANAAPTPGPGRFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | Not tested | LEE | Protein | 4e-175 | 100 |
| tir | AAY25393.1 | translocated intimin receptor | Virulence | LEE | Protein | 1e-173 | 99 |
| tir | AAY25395.1 | translocated intimin receptor | Virulence | LEE | Protein | 1e-173 | 99 |
| tir | AAY25394.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-173 | 99 |
| tir | AAC38390.1 | Tir | Virulence | LEE | Protein | 4e-148 | 84 |
| unnamed | AAL06376.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 6e-125 | 73 |
| tir | CAI43867.1 | translocated intimin receptor | Not tested | LEE | Protein | 6e-95 | 63 |
| tir | YP_003223468.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 8e-95 | 63 |
| tir | AAK26722.1 | Tir | Virulence | LEE | Protein | 3e-97 | 63 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 4e-97 | 63 |
| tir | AAL57549.1 | Tir | Virulence | LEE | Protein | 3e-97 | 63 |
| espE | CAC81869.1 | EspE protein | Virulence | LEE II | Protein | 3e-97 | 63 |
| tir | AAY25391.1 | translocated intimin receptor | Virulence | LEE | Protein | 5e-84 | 60 |
| tir | AAY25390.1 | translocated intimin receptor | Virulence | LEE | Protein | 5e-84 | 60 |
| ECs4561 | NP_312588.1 | hypothetical protein | Virulence | LEE | Protein | 1e-83 | 59 |
| tir | AAC31506.1 | L0027 | Virulence | LEE | Protein | 1e-83 | 59 |
| tir | AAY25392.1 | translocated intimin receptor | Virulence | LEE | Protein | 1e-83 | 59 |
| tir | ACU09451.1 | translocated intimin receptor protein Tir | Virulence | LEE | Protein | 1e-83 | 59 |
| tir | NP_290261.1 | translocated intimin receptor protein | Not tested | LEE | Protein | 1e-83 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | VFG0737 | Protein | 2e-148 | 84 |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | VFG0805 | Protein | 6e-84 | 59 |
