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Name : escD (ECO111_3742) Accession : YP_003236078.1 Strain : Escherichia coli 11128 Genome accession: NC_013364 Putative virulence/resistance : Virulence Product : T3SS structure protein EscD Function : - COG functional category : - COG ID : - EC number : - Position : 3726522 - 3727742 bp Length : 1221 bp Strand : + Note : Integrative element ECO111_IE05 DNA sequence : ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCAATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC GATAGGCACAGAAGATAACGATATTGTTTACTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG AAGGTGTTTTCCTTTTATCTCCAATTGAATTTTGGATTGATGGACAGCCCACTCCCTATGAAGCAGATCAACCATTACCT ATCGGAAAGGTCATCGATATAGCGGGGTGTGGCTTCATCATTGGTGATATTGACCACGCCCTGCCATTGTCTGATATGCC AGAAAGGTTCTCTGCCAGGAATCAACGCAAAAAGCGTCTTATCCTGGCAGGCGTGATTGGTGCCGCTATTGCGTTGTCTG GAGCCATCGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACTCCCAACGTTTACCAGAGCTGATGTATATCAGCAGCTA AAAGAAAACAAACTTTATGCAATCACCCTGGTATGGCATGGGAAAAATATCGCGCTTTATGGGCGTTGCGAATCAACCAC GGATTTAACTCCATTTTTCAATTACCTGAAAGAAAATAATATTTTTTATTACAATAATATCATTTGCAATAACCAAATCA TATCCGCAATTAATGATATTTTAACGGAATACGGTTATAAAGATATCATCATTACAAAAGGTAATAAGCCTGGATTCTTT CTGTTATCGGGATACATTCCCCCTTCACCCAAATGGAGCGAAGTTGAAAATCTGTTACTGAATACGCCGGGAGTTGCTGG ATGGGAAATACACAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTTAAGAAGAATAAATTAATAAACTATG TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAAGTTTCTCAACAGAACGAGAGTAAGATCCTTGCCATT ATAAATGCAATGAACAAAAATAGTAACGTAAAGATACTATTTCAGAATATTCAACCGTACATTTCAGCAGATATCTTTCC TGGAAAAATACTCAGAATCAGCGGCACGATGACGAATCCAACAATTGCTCTTGATAACGGTACAAGCCTGGGAATTGGTA GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA CATATTCCGCTATCGTATTAA Protein sequence : MLSSYKIKLLNGAMRNRELQLPMGNLTIGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPIEFWIDGQPTPYEADQPLP IGKVIDIAGCGFIIGDIDHALPLSDMPERFSARNQRKKRLILAGVIGAAIALSGAIGSYVLLSPKAELPTFTRADVYQQL KENKLYAITLVWHGKNIALYGRCESTTDLTPFFNYLKENNIFYYNNIICNNQIISAINDILTEYGYKDIIITKGNKPGFF LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI INAMNKNSNVKILFQNIQPYISADIFPGKILRISGTMTNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI HIPLSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| escD | YP_003236078.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 3e-166 | 100 |
| escD | YP_003223465.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 4e-161 | 97 |
| escD | AAK26725.1 | EscD | Virulence | LEE | Protein | 3e-161 | 97 |
| escD | YP_003232163.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 4e-161 | 97 |
| escD | AAL57552.1 | EscD | Virulence | LEE | Protein | 3e-161 | 97 |
| escD | CAC81872.1 | EscD protein | Virulence | LEE II | Protein | 3e-161 | 97 |
| escD | CAI43864.1 | EscD protein | Virulence | LEE | Protein | 3e-161 | 97 |
| unnamed | ACU09448.1 | type III secretion apparatus protein YscD/HrpQ family | Virulence | LEE | Protein | 3e-160 | 96 |
| escD | NP_290258.1 | hypothetical protein | Virulence | LEE | Protein | 4e-160 | 96 |
| escD | AAC31503.1 | L0024 | Virulence | LEE | Protein | 3e-160 | 96 |
| ECs4558 | NP_312585.1 | EscD | Virulence | LEE | Protein | 4e-160 | 96 |
| unnamed | AAC38402.1 | EscD | Virulence | LEE | Protein | 2e-157 | 95 |
| unnamed | AAL06379.1 | EscD | Virulence | LEE | Protein | 2e-153 | 92 |
| escD | AFO66391.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 4e-113 | 59 |
| escD | AFO66302.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 2e-113 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| escD | YP_003236078.1 | T3SS structure protein EscD | VFG0802 | Protein | 2e-160 | 96 |
| escD | YP_003236078.1 | T3SS structure protein EscD | VFG0740 | Protein | 1e-157 | 95 |
