Gene Information

Name : espD (ECO26_5284)
Accession : YP_003232166.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : translocator EspD
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 5360766 - 5361908 bp
Length : 1143 bp
Strand : +
Note : Integrative element ECO26_IE08

DNA sequence : 
ATGCTTAATGTAAATAGCGATATCCAGTCTATGAGGTCTGGGGCCAGCGCTGCTACGGCTACTTCAGGTATTAATCAGCC
TGAAGTGACTTCCGCGCTGGATTTACAACTGGTTAAATCCACGGCCCCATCAGCAAGTTGGACAGAAAGTACCGCTTTAC
CAACGCCACCGGCAGGACACTCATTAGTGACGCCCTCTGTTGCTGAGGATGTCCTGAGTAAACTGTTTGGTGGTATTAGT
GGTGAAGTTAGGAGTCGAACAGAGGGAACCGAACCACAGCGCAGCACTCAGAATGCAAGCTCTGGCTATCCTTATCTTTC
TCAGGTGAATAACGTTGACCCTCAGGCCATGATGATGATGGTCACCCTGTTATCCCTGGATGCTTCAGCGCAGAAAGTTG
CGAGTATGAAAAACTCCAACGAGATCTACACGGATGGGCAAAATAAGGCGCTGGATAATAAAACGCTGGAGTTTAAAAAG
CAGCTCGAAGAACAACAGAAAGCCGAAGAGAAAGCACAAAAAAGTAAAATTCTTGGTCAGGTCTTTGGTTGGTTGGGCGT
CGCGGTAACTGCTATTGCAGCTATTTTTAACCCGGCACTCTGGGCTGTTGTTGCCGTTAGCGCAACAGCAATGGCACTGC
AAACTGCAGTTGATGTAATGGGCGATAAGGCCCCGCAGGCGTTAAAGACAGCAGCGCAAGTCTTTGGCGGAGTATCTATT
GCTGCAAGTATTCTGACAGCCGGCATTGGCGGGGTGTCTTCACTTATGTCTAAAGTTGGCGATGTCGCTAACAAAGTTGG
TTCAAACATCGTGAAAACAGTTACTAAACTGGCCGATGTATTTGTTGAGAACGTTGTTTCAAAAGTTGCGGCAACGGCAA
ATGGATTTACGACCTCTGCACGTTCTATTGGGACAACTGTGCTGAATAATGATTCTGCGCAATACAGCATATTGGCTCAG
TTATCTGCTTACGCGGTACAAAACTTAACTCGACAGAGTGAAAACCTGGGTGAGAGTGCGAAGGTTGAGCTGGATAAAGC
TGCAGCCGAGTTGCGAAACCAGGCAAGCTATTTACAAAATGCTTCTCAGTTAATATCCGACTCAGCACGAGTAAATAGCC
GTATTGTTAGTGGTCGAGTTTAA

Protein sequence : 
MLNVNSDIQSMRSGASAATATSGINQPEVTSALDLQLVKSTAPSASWTESTALPTPPAGHSLVTPSVAEDVLSKLFGGIS
GEVRSRTEGTEPQRSTQNASSGYPYLSQVNNVDPQAMMMMVTLLSLDASAQKVASMKNSNEIYTDGQNKALDNKTLEFKK
QLEEQQKAEEKAQKSKILGQVFGWLGVAVTAIAAIFNPALWAVVAVSATAMALQTAVDVMGDKAPQALKTAAQVFGGVSI
AASILTAGIGGVSSLMSKVGDVANKVGSNIVKTVTKLADVFVENVVSKVAATANGFTTSARSIGTTVLNNDSAQYSILAQ
LSAYAVQNLTRQSENLGESAKVELDKAAAELRNQASYLQNASQLISDSARVNSRIVSGRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
espD AAK26728.1 EspD Virulence LEE Protein 7e-154 100
espD YP_003232166.1 translocator EspD Virulence LEE Protein 9e-154 100
espD AAL57555.1 EspD Virulence LEE Protein 7e-154 100
espD CAC81875.1 EspD protein Virulence LEE II Protein 7e-154 100
espD CAI43861.1 EspD protein Virulence LEE Protein 4e-153 99
espD YP_003223462.1 translocon EspD Virulence LEE Protein 3e-152 99
espD AAC38395.1 EspD Virulence LEE Protein 2e-134 88
unnamed AAL06382.1 EspD Virulence LEE Protein 2e-134 85
espD YP_003236075.1 translocon EspD Virulence LEE Protein 2e-132 85
espD ACU09445.1 secreted protein EspD Virulence LEE Protein 2e-119 74
espD NP_290255.1 hypothetical protein Virulence LEE Protein 3e-119 74
ECs4555 NP_312582.1 protein EspD Virulence LEE Protein 3e-119 74
espD AAC31500.1 L0021 Virulence LEE Protein 2e-119 74
espD AFO66304.1 putative secreted protein EspD Not tested SESS LEE Protein 1e-92 66
espD AFO66388.1 putative secreted protein EspD Virulence SESS LEE Protein 1e-92 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
espD YP_003232166.1 translocator EspD VFG0743 Protein 9e-135 88
espD YP_003232166.1 translocator EspD VFG0799 Protein 1e-119 74