Gene Information

Name : escD (ECO26_5281)
Accession : YP_003232163.1
Strain : Escherichia coli 11368
Genome accession: NC_013361
Putative virulence/resistance : Virulence
Product : T3SS structure protein EscD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5357699 - 5358919 bp
Length : 1221 bp
Strand : -
Note : Integrative element ECO26_IE08

DNA sequence :
ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCGATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC
GATAGGCACAGAAGATAACGATATTGTTTATTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG
AAGGTGTTTTCCTTTTATCTCCGGTTGAATTTTGGATTGATGGACAGCCCACCCCCTATGAAGCAGATCAGTCATTACCT
GTCGGAAAGGTCATCGATATAGCGGGATGTTGCTTCATCATTGGTGATATTGACCACACCTTGCCATTGTCTGATGTGCC
AGAAAGGTTCTCTGCCAAAAATCGACGTAAAAAGCGTCTTATCCTGGCTAGCGTGATTGGTGCTGCGATTGCGTTGTCTG
GCGCCATCGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACCCCCAGCGTTTACCAGAGCTGATGTATACCAGCAGCTA
AAAGAAAACAAACTTCATGCAATCACTCTGGTATGGCATGGGAAAAATGTCGCGCTTTATGGGCGTTGCGAATCAACCAC
TGATTTAACTCCATTTTTTAATTACCTGAAAGAAAAAAATATTTTTTATTACAACAATATCATTTGCAATAACCAAATCA
TCTCCGCGATTAATGATATTTTAACGGAATACGGTTATAAGGATATCATCATTACAAAAGGTAATAAGCCTGGATTCTTC
CTGTTATCGGGATACATTCCCCCTTCACCAAAATGGAGCGAAGTTGAAAATCTGTTACTGAATACGCCAGGGGTTGCTGG
ATGGGAAATACATAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTCAAAAAGAATAAATTAATAAACTATG
TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAGGTTTCTCAACAGAACGAGAGTAAGATCCTTGCCATT
ATAAATGCGATGAACAAAAATAGTAACGTCAAGATACTATTTCAGAACATTCAGCCGTACATTTCAGCAGATATTTTCCC
CGGAAAAATACTCAGAATCAGCGGCACGATGAAGAATCCAACAATTGCTCTTGATAACGGTACAAGCCTGGGAATTGGTA
GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA
CATATTCCGTTGTCTTATTAA

Protein sequence :
MLSSYKIKLLNGAMRNRELQLPMGNLTIGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADQSLP
VGKVIDIAGCCFIIGDIDHTLPLSDVPERFSAKNRRKKRLILASVIGAAIALSGAIGSYVLLSPKAEPPAFTRADVYQQL
KENKLHAITLVWHGKNVALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDILTEYGYKDIIITKGNKPGFF
LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI
INAMNKNSNVKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI
HIPLSY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escD CAC81872.1 EscD protein Virulence LEE II Protein 2e-167 100
escD CAI43864.1 EscD protein Virulence LEE Protein 2e-167 100
escD AAK26725.1 EscD Virulence LEE Protein 2e-167 100
escD YP_003223465.1 T3SS structure protein EscD Virulence LEE Protein 2e-167 100
escD AAL57552.1 EscD Virulence LEE Protein 2e-167 100
escD YP_003232163.1 T3SS structure protein EscD Virulence LEE Protein 2e-167 100
escD AAC31503.1 L0024 Virulence LEE Protein 3e-165 98
escD NP_290258.1 hypothetical protein Virulence LEE Protein 4e-165 98
unnamed ACU09448.1 type III secretion apparatus protein YscD/HrpQ family Virulence LEE Protein 3e-165 98
ECs4558 NP_312585.1 EscD Virulence LEE Protein 4e-165 98
escD YP_003236078.1 T3SS structure protein EscD Virulence LEE Protein 1e-161 97
unnamed AAC38402.1 EscD Virulence LEE Protein 1e-161 96
unnamed AAL06379.1 EscD Virulence LEE Protein 5e-156 94
escD AFO66391.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 9e-115 59
escD AFO66302.1 putative LEE-encoded type III secretion system component Virulence SESS LEE Protein 5e-115 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
escD YP_003232163.1 T3SS structure protein EscD VFG0802 Protein 2e-165 98
escD YP_003232163.1 T3SS structure protein EscD VFG0740 Protein 7e-162 96