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Name : tir (ECO26_5278) Accession : YP_003232160.1 Strain : Escherichia coli 11368 Genome accession: NC_013361 Putative virulence/resistance : Virulence Product : translocated intimin receptor Tir Function : - COG functional category : - COG ID : - EC number : - Position : 5352385 - 5354001 bp Length : 1617 bp Strand : + Note : Integrative element ECO26_IE08 DNA sequence : ATGCCTATTGGTAATCTTGGCCACAATCCCAATGTGAGAGCTTTAATTCCACCTGCACCGCCATTACCTTCACAAACCGA CGGTGCAGGAGGTGCCCGTAATCAGCTCATTAACTCAAATGGCCCGATGGGGTCTCGTTTGCTATTTACGCCTATAAGGA ATTCTGTTGCTGATGCTGCTGATTCTCGTGCCAGTGATATTCCCGGACTTCCTACAAATCCACTGCGCTTTGCTGCGTCC GAGGTATCTTTGCATGGTGCGCTTGAAGTTCTTCATGATAAAGGGGGGCTTGATACTCTTAACTCTGCTATTGGATCTTC GTTATTCCGTGTTGAAACTCGGGATGATGGCAGCCATGTTGCTATCGGGCAAAAAAATGGCCTCGAGACCACTGTTGTTT TAAGTGAGCAAGAGTTTTCTAGCTTACAGTCCCTTGATCCTGAAGGTAAAAACAAATTTGTATTTACTGGAGGCCGCGGT GGCGCAGGGCATGCTATGGTCACGGTTGCTTCAGATATCGCCGAAGCCCGTCAGAGGATAATAGATAAATTAGAACCAAA GGATACAAAGGAGACGAAGGAGCCAGGGGATCCAAATAGTGGCGAGGGAAAAATCATTGAAATTCATACCTCAACCTCAA CTTCTAGCCTCCGTGCAGATCCTAAACTTTGGTTGTCATTGGGGACTATTGCTGCAGGTCTGATAGGGATGGCTGCGACG GGGATTGCACAGGCTGTTGCGTTGACTCCAGAGCCGGATGACCCAATCACTACCGACCCTGATGCTGCAGCAAACACAGC TGAAGCAGCGGCAAAAGATCAGTTAACGAAAGAAGCATTCCAGAACCCAGATAACCAGAAAGTTAATATCGATGAGAACG GAAATGCAATTCCGTCCGGGGAACTAAAAGATGATGTTGTTGCGCAAATAGCAGAACAAGCTAAAGCGGCGGGTGAACAG GCCAGACAGGAAGCTATTGAAAGTAATTCTCAGGCGCAGCAAAAATATGATGAACAGCATGCTAAACGCGAACAGGAAAT GTCTCTTTCATCGGGGGTTGGCTACGGTATTAGTGGTGCGCTGATTCTTGGCGGGGGAATTGGTGCCGGTGTTACTGCTG CTCTTCATCGGAAAAACCAACCGGCAGAACAAACAATCACTACACGTACGGTAGTCGATAATCAGCCTACGAATAACGCA TCTGCGCAGGGCAATACTGACACAAGTGGGCCAGAAGAGTCCCCGGCGAGCAGACGTAATTCGAATGCCAGCCTCGCATC GAACGGGTCTGACACCTCCAGCACGGGCACGGTAGAGAATCCGTATGCTGACGTTGGAATGCCCAGAAATGATTCACTGG CTCGCATTTCAGAGGAACCTATTTATGATGAGGTCGCTGCAGATCCTAATTATAGCGTCATTCAACATTTTTCAGGGAAC AGCCCAGTTACCGGAAGGTTAGTGGGAACCCCAGGGCAAGGTATCCAAAGTACTTATGCGCTTCTGGCAAGCAGCGGCGG ATTGCGTTTAGGTATGGGAGGATTAACGGGGGGGGGCGAGAGCGCAGTAAGTACTGCCAATGCCGCACCAACGCCGGGAC CCGCACGTTTCGTTTAA Protein sequence : MPIGNLGHNPNVRALIPPAPPLPSQTDGAGGARNQLINSNGPMGSRLLFTPIRNSVADAADSRASDIPGLPTNPLRFAAS EVSLHGALEVLHDKGGLDTLNSAIGSSLFRVETRDDGSHVAIGQKNGLETTVVLSEQEFSSLQSLDPEGKNKFVFTGGRG GAGHAMVTVASDIAEARQRIIDKLEPKDTKETKEPGDPNSGEGKIIEIHTSTSTSSLRADPKLWLSLGTIAAGLIGMAAT GIAQAVALTPEPDDPITTDPDAAANTAEAAAKDQLTKEAFQNPDNQKVNIDENGNAIPSGELKDDVVAQIAEQAKAAGEQ ARQEAIESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGALILGGGIGAGVTAALHRKNQPAEQTITTRTVVDNQPTNNA SAQGNTDTSGPEESPASRRNSNASLASNGSDTSSTGTVENPYADVGMPRNDSLARISEEPIYDEVAADPNYSVIQHFSGN SPVTGRLVGTPGQGIQSTYALLASSGGLRLGMGGLTGGGESAVSTANAAPTPGPARFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| espE | CAC81869.1 | EspE protein | Virulence | LEE II | Protein | 2e-180 | 100 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 2e-180 | 100 |
| tir | AAK26722.1 | Tir | Virulence | LEE | Protein | 5e-180 | 99 |
| tir | AAL57549.1 | Tir | Virulence | LEE | Protein | 5e-180 | 99 |
| tir | CAI43867.1 | translocated intimin receptor | Not tested | LEE | Protein | 5e-177 | 98 |
| tir | YP_003223468.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 7e-177 | 98 |
| unnamed | AAL06376.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 7e-106 | 68 |
| tir | AAC38390.1 | Tir | Virulence | LEE | Protein | 5e-105 | 67 |
| tir | ACU09451.1 | translocated intimin receptor protein Tir | Virulence | LEE | Protein | 1e-115 | 66 |
| tir | NP_290261.1 | translocated intimin receptor protein | Not tested | LEE | Protein | 2e-115 | 66 |
| ECs4561 | NP_312588.1 | hypothetical protein | Virulence | LEE | Protein | 2e-115 | 66 |
| tir | AAC31506.1 | L0027 | Virulence | LEE | Protein | 1e-115 | 66 |
| tir | AAY25392.1 | translocated intimin receptor | Virulence | LEE | Protein | 1e-115 | 66 |
| tir | AAY25390.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-115 | 65 |
| tir | AAY25391.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-115 | 65 |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | Not tested | LEE | Protein | 1e-94 | 63 |
| tir | AAY25395.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-94 | 63 |
| tir | AAY25394.1 | translocated intimin receptor | Virulence | LEE | Protein | 2e-94 | 63 |
| tir | AAY25393.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-94 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tir | YP_003232160.1 | translocated intimin receptor Tir | VFG0737 | Protein | 3e-105 | 67 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | VFG0805 | Protein | 8e-116 | 66 |
