Gene Information

Name : ECO103_5080 (ECO103_5080)
Accession : YP_003224893.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 5284479 - 5285354 bp
Length : 876 bp
Strand : +
Note : Integrative element ECO103_IE06

DNA sequence :
ATGAATAAACCTGACGGCCTTCAGGCCTTTGAACAACCGCTTGCGTCGCTTCCGTGCACACTTCGCCAGCTTATTCTTGA
ACGTATCCAGAACCTGACCCATTACGAGCCGGTGATTGGAATCATGGGCAAAAGTGGTACAGGTAAATCCTCTCTCTGCA
ACGAACTTTTCCAGGGCGAGGTGTCCCCAGTGAGTGACGTGAACGCCTGTACTCGCGACGTACTGCGCTTCCGGTTGCGC
AGCGGTCGTCACAGTCTGGTGATTGTCGATTTACCGGGTGTAGGTGAAAACGGGCGACGGGATCATGAGTACCGGGCCCT
GTACCGTCGAATGCTGCCGGAGCTGGACCTGGTGCTGTGGGTCATTAAGGCCGATGATCGGGCACTGACCTTGGACGAGC
AGTTCTGGCTCGGTGTGATGCAACCTTACAGGCAAAAGGTACTGTTTGTGATTAACCAGGCCGACAAAATCGAACCCTGC
TATGAATGGGATACCCTCACCAGCAAACCTTCAACACACCAACAGGGAAATCTTAAAGCGAAGCAGGCTGCGATTATGGC
GATGTTTAAACCACATCATCCGGTCTGTGCGGTGTCCGCCAGCACTGGATGGGGCATTGAGGATATGGTGGCAGCCATGA
TGCGCTGTCTGCCTGACCGCGCCACCAGCCCGGTGGTGACACAACTGCACGGGAGACTCTGCACAGAGCCGGTAAAGTCG
CAGGCCCGTGACAGTTTCGGTGACGCTGTGGGCCGTGTTTTCGATACGGCAGAGTCATCGTCATTACTGCCTGCGCCACT
GAAAAAGGTGATTCGTACCGTGCGTGATGCGGTGGTGTCGGTCGCACGAGCCGTCTGGGACTGGATATTCTTCTGA

Protein sequence :
MNKPDGLQAFEQPLASLPCTLRQLILERIQNLTHYEPVIGIMGKSGTGKSSLCNELFQGEVSPVSDVNACTRDVLRFRLR
SGRHSLVIVDLPGVGENGRRDHEYRALYRRMLPELDLVLWVIKADDRALTLDEQFWLGVMQPYRQKVLFVINQADKIEPC
YEWDTLTSKPSTHQQGNLKAKQAAIMAMFKPHHPVCAVSASTGWGIEDMVAAMMRCLPDRATSPVVTQLHGRLCTEPVKS
QARDSFGDAVGRVFDTAESSSLLPAPLKKVIRTVRDAVVSVARAVWDWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL99256.1 unknown Not tested LEE Protein 2e-76 60
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 4e-76 60
unnamed AAL08471.1 unknown Not tested SRL Protein 1e-76 60
Z1210 NP_286745.1 histone Not tested TAI Protein 2e-76 60
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 5e-77 60
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 2e-76 60
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 1e-75 60
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 1e-75 60
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 4e-76 60
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 3e-76 60
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 3e-76 60
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 3e-76 60
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 9e-75 59
unnamed CAD42093.1 hypothetical protein Not tested PAI II 536 Protein 2e-49 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_5080 YP_003224893.1 hypothetical protein VFG1062 Protein 6e-77 60
ECO103_5080 YP_003224893.1 hypothetical protein VFG0654 Protein 5e-76 60
ECO103_5080 YP_003224893.1 hypothetical protein VFG1674 Protein 3e-77 60
ECO103_5080 YP_003224893.1 hypothetical protein VFG1612 Protein 1e-49 41