Gene Information

Name : ECO103_4888 (ECO103_4888)
Accession : YP_003224709.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5074404 - 5074892 bp
Length : 489 bp
Strand : -
Note : Integrative element ECO103_IE05

DNA sequence :
ATGAACCTTTCCCTGACGCTCGAAGCCGACAGCCTTAACGTACAGGCACTGAACATGGGACGCATTGTCGTTGACGTCGA
TGGTATTGAGCTCGCTGAACTGATTAACAATGTCACTGAAAACGGTTATTCAGTCCGCGTGGTGGAGGACTCCGGGCAAC
AGTCAACCTGCACACCACCACCGTTAACAATCCTTGCCGGCATACGCTGCAGCACCGCACATATCACGGAAACAGACAAC
GCCTGGCTGTACTCGCTGTCGCATCAGAGCAGTAACTTCGGCGAATCAGAATGGATTCATTTTACAGGTAGCGGATATCT
GTTACGTACTGATGCGTGGTCATACCCGGTTCTGCGGCTTAAACGCCTGGGCCTGTCCAGAACGTTCCGCCGTCTGGTTG
TCACACTTACCCGACGTTATGGCGTCAGTCTCATTCATCTGGATGCCAGCGCCGAATGTCTGCCGGATTTACCCACTTTC
GACTGGTAA

Protein sequence :
MNLSLTLEADSLNVQALNMGRIVVDVDGIELAELINNVTENGYSVRVVEDSGQQSTCTPPPLTILAGIRCSTAHITETDN
AWLYSLSHQSSNFGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGLSRTFRRLVVTLTRRYGVSLIHLDASAECLPDLPTF
DW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3593 YP_003223450.1 hypothetical protein Not tested LEE Protein 1e-62 100
c5148 NP_756996.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-59 89
yeeW ADD91698.1 YeeW Not tested PAI-I AL862 Protein 4e-58 88
yeeW CAE85205.1 YeeW protein Not tested PAI V 536 Protein 1e-59 88
yeeW CAI43849.1 YeeW protein Not tested LEE Protein 2e-57 86
aec77 AAW51760.1 Aec77 Not tested AGI-3 Protein 1e-55 85
Z1662 NP_287164.1 hypothetical protein Not tested TAI Protein 1e-54 85
Z1223 NP_286758.1 hypothetical protein Not tested TAI Protein 1e-54 85
unnamed AAK00483.1 unknown Not tested SHI-1 Protein 7e-49 85
yeeW NP_838488.1 hypothetical protein Not tested SHI-1 Protein 6e-55 84
yeeW NP_708774.1 hypothetical protein Not tested SHI-1 Protein 6e-55 84
yeeW AAZ04462.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-54 84
APECO1_3485 YP_854326.1 hypothetical protein Not tested PAI I APEC-O1 Protein 2e-54 84
unnamed AAL08479.1 unknown Not tested SRL Protein 9e-54 84
unnamed CAD42102.1 hypothetical protein Not tested PAI II 536 Protein 3e-54 83
unnamed AAC31487.1 L0008 Not tested LEE Protein 9e-54 82
unnamed ACU09434.1 conserved hypothetical protein Not tested LEE Protein 9e-54 82
Z5092 NP_290243.1 hypothetical protein Not tested LEE Protein 1e-53 82
ECs4540 NP_312567.1 hypothetical protein Not tested LEE Protein 1e-53 82
unnamed CAI43904.1 hypothetical protein Not tested LEE Protein 4e-50 81
unnamed AAL57574.1 unknown Not tested LEE Protein 3e-44 80
unnamed CAD66208.1 hypothetical protein Not tested PAI III 536 Protein 6e-50 80
z5092 CAD33790.1 Z5092 protein Not tested PAI I 536 Protein 4e-50 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_4888 YP_003224709.1 hypothetical protein VFG0664 Protein 2e-55 84
ECO103_4888 YP_003224709.1 hypothetical protein VFG1070 Protein 4e-54 84
ECO103_4888 YP_003224709.1 hypothetical protein VFG1621 Protein 1e-54 83
ECO103_4888 YP_003224709.1 hypothetical protein VFG0787 Protein 4e-54 82
ECO103_4888 YP_003224709.1 hypothetical protein VFG1683 Protein 2e-50 80
ECO103_4888 YP_003224709.1 hypothetical protein VFG1531 Protein 2e-50 78