Gene Information

Name : escS (ECO103_3632)
Accession : YP_003223489.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : T3SS structure protein EscS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 3706976 - 3707245 bp
Length : 270 bp
Strand : -
Note : Integrative element ECO103_IE03

DNA sequence :

ATGGAAACTGGATATTTTGTTCAATTATGTGTGCAAACGCTTTGGATAATATTTATCCTCTCACTGCCTACAGTCATAGC
GGCCTCTGTTGTCGGCATTATTATTAGCCTGGTTCAGGCTATAACGCAGTTACAGGATCAAACATTGCCTTTTTTGCTAA
AAATAATAGCAGTGTTTGCTACGCTTGCCCTGACTTATCACTGGATGGGAACAACAATCATCAACTTCTCGTCGATAATA
TTTGAAATGATTCCGAAGGTGAATGGCTAA

Protein sequence :

METGYFVQLCVQTLWIIFILSLPTVIAASVVGIIISLVQAITQLQDQTLPFLLKIIAVFATLALTYHWMGTTIINFSSII
FEMIPKVNG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
escS	AAK26701.1	EscS	Virulence	LEE	Protein	4e-29	100
escS	AAL57528.1	EscS	Virulence	LEE	Protein	4e-29	100
escS	CAC81848.1	EscS protein	Virulence	LEE II	Protein	4e-29	100
escS	YP_003223489.1	T3SS structure protein EscS	Virulence	LEE	Protein	5e-29	100
escS	YP_003232139.1	T3SS structure protein EscS	Virulence	LEE	Protein	5e-29	100
escS	CAI43888.1	EscS protein	Virulence	LEE	Protein	4e-29	99
unnamed	AAL06355.1	EscS	Virulence	LEE	Protein	8e-29	97
escS	YP_003236102.1	T3SS structure protein EscS	Virulence	LEE	Protein	2e-28	97
escS	NP_290282.1	hypothetical protein	Virulence	LEE	Protein	2e-28	97
ECs4582	NP_312609.1	EscS	Virulence	LEE	Protein	2e-28	97
escS	AAC38370.1	EscS	Virulence	LEE	Protein	2e-28	97
escS	AAC31527.1	L0048	Virulence	LEE	Protein	2e-28	97
escS	ACU09472.1	hypothetical protein	Not tested	LEE	Protein	2e-28	97
escS	AFO66341.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	1e-24	83
escS	AFO66401.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	1e-24	83
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	1e-06	45
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	2e-06	45
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	1e-06	45
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	2e-06	45
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	1e-06	45
hrcS	AAT96263.1	HrcS	Virulence	S-PAI	Protein	3e-06	45
hrcS	AAT96304.1	HrcS	Virulence	S-PAI	Protein	3e-06	45
hrcS	AAT96344.1	HrcS	Virulence	S-PAI	Protein	3e-06	45
hrcS	ABA47280.1	HrcS	Virulence	S-PAI	Protein	8e-07	45
hrcS	AAG33885.1	HrcS	Virulence	Hrp PAI	Protein	7e-07	44
hrcS	NP_791221.1	type III secretion protein HrcS	Virulence	Hrp PAI	Protein	1e-06	44
hrcS	AAT96147.1	HrcS	Virulence	T-PAI	Protein	1e-06	44
hrcS	AAT96201.1	HrcS	Virulence	T-PAI	Protein	1e-06	44
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	3e-07	42
hrpO	AAB05076.1	HrpO	Virulence	Hrp PAI	Protein	5e-06	42
hrcS	ABQ88360.1	HrcS	Virulence	Hrp PAI	Protein	5e-06	42
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	2e-08	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
escS	YP_003223489.1	T3SS structure protein EscS	VFG0826	Protein	7e-29	97
escS	YP_003223489.1	T3SS structure protein EscS	VFG0716	Protein	7e-29	97
escS	YP_003223489.1	T3SS structure protein EscS	VFG0520	Protein	4e-07	45
escS	YP_003223489.1	T3SS structure protein EscS	VFG2132	Protein	8e-05	43
escS	YP_003223489.1	T3SS structure protein EscS	VFG0395	Protein	3e-08	41
escS	YP_003223489.1	T3SS structure protein EscS	VFG0043	Protein	8e-08	41