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Name : escD (ECO103_3608) Accession : YP_003223465.1 Strain : Escherichia coli 12009 Genome accession: NC_013353 Putative virulence/resistance : Virulence Product : T3SS structure protein EscD Function : - COG functional category : - COG ID : - EC number : - Position : 3684881 - 3686101 bp Length : 1221 bp Strand : + Note : Integrative element ECO103_IE03 DNA sequence : ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCGATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC GATAGGCACAGAAGATAACGATATTGTTTATTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG AAGGTGTTTTCCTTTTATCTCCGGTTGAATTTTGGATTGATGGACAGCCCACCCCTTATGAAGCAGATCAGTCATTACCT GTCGGAAAGGTCATCGATATAGCGGGATGTTGCTTCATCATTGGTGATATTGACCACACCTTGCCATTGTCTGATGTGCC AGAAAGGTTCTCTGCCAAAAATCGACGTAAAAAGCGTCTTATCCTGGCTAGCGTGATTGGTGCTGCGATTGCGTTGTCTG GCGCCATAGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACCCCCAGCGTTTACCAGAGCTGATGTATACCAGCAGCTA AAAGAAAACAAACTTCATGCAATCACTCTGGTATGGCATGGGAAAAATGTCGCGCTTTATGGACGTTGCGAATCAACCAC TGATTTAACTCCATTTTTTAATTACCTGAAAGAAAAAAATATTTTTTATTACAACAATATCATTTGCAATAACCAAATCA TCTCCGCGATTAATGATATTTTAACGGAATACGGTTATAAGGATATCATCATTACAAAAGGTAATAAGCCTGGATTTTTC CTGTTATCGGGATACATTCCCCCTTCACCCAAATGGAGCGAAGTTGAAAATCTGTTACTGAATACGCCAGGGGTTGCTGG ATGGGAAATACATAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTCAAAAAGAATAAATTAATAAACTATG TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAGGTTTCTCAACAGAACGAGAGTAAGATCCTTGCCATT ATAAATGCGATGAACAAAAATAGTAACGTCAAGATACTATTTCAGAACATTCAGCCGTACATTTCAGCAGATATTTTCCC CGGAAAAATACTCAGAATCAGCGGCACGATGAAGAATCCAACAATTGCTCTTGATAACGGTACAAGCCTGGGAATTGGTA GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA CATATTCCGCTATCGTATTAA Protein sequence : MLSSYKIKLLNGAMRNRELQLPMGNLTIGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADQSLP VGKVIDIAGCCFIIGDIDHTLPLSDVPERFSAKNRRKKRLILASVIGAAIALSGAIGSYVLLSPKAEPPAFTRADVYQQL KENKLHAITLVWHGKNVALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDILTEYGYKDIIITKGNKPGFF LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI INAMNKNSNVKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI HIPLSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| escD | AAK26725.1 | EscD | Virulence | LEE | Protein | 2e-167 | 100 |
| escD | YP_003223465.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 2e-167 | 100 |
| escD | AAL57552.1 | EscD | Virulence | LEE | Protein | 2e-167 | 100 |
| escD | YP_003232163.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 2e-167 | 100 |
| escD | CAC81872.1 | EscD protein | Virulence | LEE II | Protein | 2e-167 | 100 |
| escD | CAI43864.1 | EscD protein | Virulence | LEE | Protein | 2e-167 | 100 |
| escD | AAC31503.1 | L0024 | Virulence | LEE | Protein | 3e-165 | 98 |
| escD | NP_290258.1 | hypothetical protein | Virulence | LEE | Protein | 4e-165 | 98 |
| unnamed | ACU09448.1 | type III secretion apparatus protein YscD/HrpQ family | Virulence | LEE | Protein | 3e-165 | 98 |
| ECs4558 | NP_312585.1 | EscD | Virulence | LEE | Protein | 4e-165 | 98 |
| escD | YP_003236078.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 1e-161 | 97 |
| unnamed | AAC38402.1 | EscD | Virulence | LEE | Protein | 1e-161 | 96 |
| unnamed | AAL06379.1 | EscD | Virulence | LEE | Protein | 5e-156 | 94 |
| escD | AFO66391.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 9e-115 | 59 |
| escD | AFO66302.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 5e-115 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| escD | YP_003223465.1 | T3SS structure protein EscD | VFG0802 | Protein | 2e-165 | 98 |
| escD | YP_003223465.1 | T3SS structure protein EscD | VFG0740 | Protein | 7e-162 | 96 |
