Gene Information

Name : ECO103_3589 (ECO103_3589)
Accession : YP_003223446.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : radC-like protein YeeS
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 3671087 - 3671563 bp
Length : 477 bp
Strand : +
Note : Integrative element ECO103_IE03

DNA sequence : 
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGGCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATTACGGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGACAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Protein sequence : 
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVGFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGRQVFSFAEHGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-63 100
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-61 98
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-61 97
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-60 97
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-61 97
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-60 97
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-61 97
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-60 97
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-61 97
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-61 97
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-61 97
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-61 97
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 6e-61 97
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 4e-54 96
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 8e-60 96
unnamed AAL08475.1 unknown Not tested SRL Protein 1e-60 96
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 3e-59 95
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-59 95
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-59 95
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-16 52
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-18 50
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-18 50
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 6e-19 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-19 47
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 8e-19 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG1617 Protein 4e-61 97
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG1528 Protein 1e-61 97
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG1678 Protein 5e-61 97
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG1066 Protein 4e-61 96
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG0660 Protein 1e-59 95
ECO103_3589 YP_003223446.1 radC-like protein YeeS VFG1119 Protein 3e-19 50