Gene Information

Name : ECO103_3429 (ECO103_3429)
Accession : YP_003223302.1
Strain : Escherichia coli 12009
Genome accession: NC_013353
Putative virulence/resistance : Virulence
Product : type III secretion protein EpaQ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 3497143 - 3497403 bp
Length : 261 bp
Strand : -
Note : -

DNA sequence :
ATGGACGATATTGTTTTTGCGGGGAATAGGGCGCTGTATCTGATTTTAGTTATGTCTGCAGGACCTATTGAAGTTGCGAC
ATTTGTTGGTTTATTGGTAGGGCTTTTTCAAACGGTAACGCAGTTGCAAGAACAGACGTTGCCATTTGGCGTGAAATTAT
TGTGCGTAAGTATTTGCTTTTTTTTAATGAGCGGGTGGTATGGTGAAAAATTATATTCATTTGGTATCGAAATGCTGAAT
TTAGCATTCGCGAGAGGATAG

Protein sequence :
MDDIVFAGNRALYLILVMSAGPIEVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFFLMSGWYGEKLYSFGIEMLN
LAFARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 7e-35 99
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 7e-35 98
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 8e-23 69
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 8e-23 69
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 8e-23 69
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 8e-23 69
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-25 67
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 4e-15 51
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-11 45
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 2e-10 44
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 2e-09 42
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 2e-09 42
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 2e-09 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG0550 Protein 2e-23 69
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG1013 Protein 7e-18 67
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG2454 Protein 2e-15 54
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG1772 Protein 2e-19 53
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG0395 Protein 5e-12 46
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG0043 Protein 1e-10 45
ECO103_3429 YP_003223302.1 type III secretion protein EpaQ VFG0187 Protein 7e-08 44