Gene Information

Name : CDR20291_0862 (CDR20291_0862)
Accession : YP_003217363.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1051074 - 1051757 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence : 
ATGGATATTCTTGTGGTTAATAATTTATGTAAAACATATGGAAATGGATATACAAAAGTAGAGGCATTGAAAGATGTATC
CTTTACAGTTTCAAAAGGAGAGTTTGTGACTGTAGTTGGAGAATCTGGTTCAGGAAAGAGTACACTATTAAATCTCTTAG
GAGGTCTTGATACTCCAACATCAGGGAGAATATTTATTGATGGTAAAGAAATATGTTCAATGAAAGAGGAAAAACAGACT
ATTTTTAGACGTCGTAACATAGGGTTTATATTTCAGGCATATAACCTTATACCAGAACTAACTGTGGAGCAAAATATAAT
ATTCCCATTGTTATTAGATTATAAAAAACCAGATACTATTTACTTAGATGAAGTATTGACTATTTTAGGTCTTAAAGATA
GGAAAAATCATCTTCCAAATCAATTATCTGGTGGTCAACAACAGAGAGTTGCAATTGGAAGGGCTTTGATTACAAAGCCA
AGTATTATACTGGCAGATGAGCCAACGGGAAATCTTGACAGTAAAAATAGTAATGATGTAATTTCACTTTTAAAAGTGAC
TGCAGAAAAGTATAATCAAACCATTATTATGATAACTCATAATACGAATATAGCTTCTACAGCAGATAGAATACTACAGG
TTTCTGATGGTGTGCTTACAGACCTGGGGGTGAATAGAGAATGA

Protein sequence : 
MDILVVNNLCKTYGNGYTKVEALKDVSFTVSKGEFVTVVGESGSGKSTLLNLLGGLDTPTSGRIFIDGKEICSMKEEKQT
IFRRRNIGFIFQAYNLIPELTVEQNIIFPLLLDYKKPDTIYLDEVLTILGLKDRKNHLPNQLSGGQQQRVAIGRALITKP
SIILADEPTGNLDSKNSNDVISLLKVTAEKYNQTIIMITHNTNIASTADRILQVSDGVLTDLGVNRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-37 49
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-37 48
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 48
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 48
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_0862 YP_003217363.1 ABC transporter ATPase CP001581.1.gene798.p Protein 3e-80 72
CDR20291_0862 YP_003217363.1 ABC transporter ATPase CP001581.1.gene598.p Protein 9e-60 60
CDR20291_0862 YP_003217363.1 ABC transporter ATPase NC_012469.1.7686878. Protein 1e-41 45
CDR20291_0862 YP_003217363.1 ABC transporter ATPase NC_012469.1.7685735. Protein 5e-39 43
CDR20291_0862 YP_003217363.1 ABC transporter ATPase NC_008702.1.4606598. Protein 6e-37 42