Gene Information

Name : CDR20291_0429 (CDR20291_0429)
Accession : YP_003216936.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 514652 - 515326 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGAACAATAAAATACTCGTCGTAGATGATGAGGAAGGTATAATAACACTCTTAAAAGATTACTTTGAAATGAATGGTTA
TGAGGTTTACACTGCTCAAAGTGGAAAAGACTCATTAAAAAAAATATCCAAAAATCCAGATATCATTCTACTTGATATAA
ACATGCCTGAAATAGATGGAATTGAAGTTTGTAATAGAATTAGAGATTATGTATCATGCCCTATTCTATTTCTTACAGCC
AGAATTGAAAATACTGACAAGATAAATGGTTTTCGTGCTGGTGCTGATGATTATATTGTAAAACCTTTTGATTTAGACGA
ACTTGGAGCTAGAGTATCTGCACATTTAAGACGTGAACAAAGGAAGTCAAATCAAACTAAAATTAAATTTTATAATGATT
TAACAATAGATTACGAAAAAAGGTTAATTTGTATATATAATAATCAGATTTCACTTTCAAAAAAGGAATTTGATATAGTA
GAGCTTCTCTCTATGAATCCTGGACAGGTATTTGATAAAGAAAAAATATATGATAGAGTCTGGGGATACAATAGCAATGG
AAATAGTGATGTTATAATGGAACACATTAGAAAAATACGAATCAAACTATCAAAACATACTCTTGAAAATTATATAGAAA
CAGTCTGGGGAGTTGGTTATAAATGGATAAAATAA

Protein sequence : 
MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKNPDIILLDINMPEIDGIEVCNRIRDYVSCPILFLTA
RIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQRKSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIV
ELLSMNPGQVFDKEKIYDRVWGYNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYKWIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 5e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_0429 YP_003216936.1 two-component response regulator AF155139.2.orf0.gene Protein 3e-38 42
CDR20291_0429 YP_003216936.1 two-component response regulator NC_002758.1121390.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_010079.5776364.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_002952.2859858.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_007622.3794948.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_003923.1003417.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_013450.8614146.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_002951.3238224.p0 Protein 4e-31 41
CDR20291_0429 YP_003216936.1 two-component response regulator NC_007793.3914065.p0 Protein 4e-31 41