Gene Information

Name : CDR20291_0341 (CDR20291_0341)
Accession : YP_003216848.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 408393 - 409064 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGCCTATATTAGAGATTCTTAACTTAGGTAAGATTTATGGAAAAAAGGAAACAGCTGTACATGCACTAAAGGATGCAAA
TTTAAAAATAAATAAGGGTGAATTTGTTGCGATAATTGGCCCAAGTGGAAGTGGAAAAAGCACATTTCTACATTTAGTAG
GAGGTCTTGAGAGACCAAGTAGTGGAACTATAAAAGTCGATGGTAAAGATATATGTTGCCTTTCAGATAAAAAATTAGCA
AAATATAGAAGACAAAAAGTAGGCTTTGTTTTTCAACAGTATAACCTAATTCCAGTATTAAATGTAAAAGAAAATATAGA
ATTACCACTAAAGTTAGACAATAAAAAAGTTGATGAAGAATACATCGAAGACATTATAAATTTATTGGGTCTTAGTGAGA
GGAAAAATCATCTTCCAAATCAATTATCTGGTGGTCAACAACAAAGGGTTGCTATTGCACGCGCTTTATCTGCAAAACCA
AGTATAATCCTAGCAGATGAACCAACAGGAAATTTGGATAGTAAAACTACGGAAGAAGTCATGGATTTACTAAAAAGTTC
TATAAAAAAATATAACCAAACACTTATAATAATAACACATAATGAAAATATTGCTAGAAAAGCAGATAGAATTATATCTA
TAATAGATGGAGAGCTTAAATTAACACTCTAA

Protein sequence : 
MPILEILNLGKIYGKKETAVHALKDANLKINKGEFVAIIGPSGSGKSTFLHLVGGLERPSSGTIKVDGKDICCLSDKKLA
KYRRQKVGFVFQQYNLIPVLNVKENIELPLKLDNKKVDEEYIEDIINLLGLSERKNHLPNQLSGGQQQRVAIARALSAKP
SIILADEPTGNLDSKTTEEVMDLLKSSIKKYNQTLIIITHNENIARKADRIISIIDGELKLTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-37 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 45
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 9e-34 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 8e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_0341 YP_003216848.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-60 55
CDR20291_0341 YP_003216848.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-59 54
CDR20291_0341 YP_003216848.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-44 49
CDR20291_0341 YP_003216848.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-41 44
CDR20291_0341 YP_003216848.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 4e-37 44