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Name : CDR20291_3490 (CDR20291_3490) Accession : YP_003219965.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Virulence Product : PTS system ascorbate-specific transporter subunit IIC Function : - COG functional category : S : Function unknown COG ID : COG3037 EC number : - Position : 4140817 - 4142088 bp Length : 1272 bp Strand : - Note : membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr DNA sequence : ATGGAGTTTATTATTAGTTTGCTGAGTACACCTGCTGTTTTGCTTGGCGTAGTTGCATGTATAGGATTGATTCTTCAAAA GAAATCAGCCGTTGAAGTATTTACAGGGTCTTCAAAAACACTTATCGGTTTTTTGATATTTGGTATTGGTGCCTCTGCTA TGACAGGAGCACTTCAAAATTTCAATAAACTGTTCCAACATGGCTTTGGAATTACTGGTGTTATAGCTTCACCAGAAGCA GCTACAGCACTTGCACAAGGTACATATGGTTTTGCAGTTTCATGTACATTAATTCTTGGATTCATATTAAATTTAGTATT TGCACGTATTACAAAGTTTAAGAATATTTTCTTTACAACAGGTCATAGTTTATTCTTTTCTTGTGTATTAGTTTTAATCA TGAAAGCACATGGATTTGATAATACAATCACTATTTTAATAGGTGGAACTATCTTAGGGTTTATGTCTGCTGCACTACCT CAATTCTGTCAACCATTTATGCGTGAATTAACAGGTGGCGACGAACAAGCTATTGGTCACTTTAACATGATTGGTTATGG TTTATCAGGTTATATTGGGCGTTTATTTTCAAAACATAAAGATGATACAACAGAGACTATAGAATTTCCTAAGTGGTTAT CAATATTCAGAGACTTCTTAATGGGTCTATCCATAGTTATGTTAATCTTATTCTATATTGCAACATTAAAAGCTGGTCAA GCATTTACTCAAGAAATTGCTGGTTCAACACATTGGTTGGTTTTTCCGCTTATAGAGGCATTTACATTTGTGGCAGGTAT GTCAATATTGATGTCAGGTGTTCGTATGTTCTTAGCTGAAATAACTGCAGCATTTGTAATCATTTCAGAAAAGTATATTC CAGGTTCACGTCCTGCGCTAGATGTTCCAACAGTATTTCCATATGCACCAAATGCAGTTATTATTGGGTTTATATCAGCA TATGCTGCTGGTCTATTAGCAATTGCTATTATGGCATCATTTCCTAGTATATTTCCTGTAGTAATTATTCCAGCTGCTCA CATATGTTTCTTCTCAGGAGGTACAGCTGCAATATTTGGCAATACTTCAGGAGGATGGAGAGGGGCTATTGCTGGGTCAT TTGTTGTTGGGTTATTACTTGCATTTTTACCAGTTATACTATATCCAGTTTATGGGACTCTTGGTATAGAAGGAGCAACT TTCCCTAATATTGATTACAACGTAGTTGGTTCGATATTACATAATATTTTACAATTTATAAAACCTATTTAA Protein sequence : MEFIISLLSTPAVLLGVVACIGLILQKKSAVEVFTGSSKTLIGFLIFGIGASAMTGALQNFNKLFQHGFGITGVIASPEA ATALAQGTYGFAVSCTLILGFILNLVFARITKFKNIFFTTGHSLFFSCVLVLIMKAHGFDNTITILIGGTILGFMSAALP QFCQPFMRELTGGDEQAIGHFNMIGYGLSGYIGRLFSKHKDDTTETIEFPKWLSIFRDFLMGLSIVMLILFYIATLKAGQ AFTQEIAGSTHWLVFPLIEAFTFVAGMSILMSGVRMFLAEITAAFVIISEKYIPGSRPALDVPTVFPYAPNAVIIGFISA YAAGLLAIAIMASFPSIFPVVIIPAAHICFFSGGTAAIFGNTSGGWRGAIAGSFVVGLLLAFLPVILYPVYGTLGIEGAT FPNIDYNVVGSILHNILQFIKPI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF8 | AAK27335.1 | unknown | Not tested | PAI-I AL862 | Protein | 1e-71 | 42 |
| unnamed | CAC39291.1 | hypothetical protein | Not tested | LPA | Protein | 1e-71 | 42 |
| vpeC | ADD91725.1 | putative PTS system-specific IIC component VpeC | Virulence | PAI-I AL862 | Protein | 1e-71 | 42 |
