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Name : lysS (CDR20291_3389) Accession : YP_003219864.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 4031012 - 4032541 bp Length : 1530 bp Strand : - Note : - DNA sequence : ATGAAAAATAATCAACAAAGCAATGAAGAAGCGCAAATTCAAGAAGACCTTAGTGAAGTACTTCAAGTAAGAAGAGATAA ACTAAAAAAATTACAAGAGTCAGGTAGAGATCCTTTTAAAGAAAGTAGATATGATAGAACTCATTATTCTATGGATATAA AAGATAACTTTGATTCTCTTGAAGGTAAAACTACAAAAATAGCAGGACGTATAATGAGCAAGAGAATACAAGGGAAAGCT GGCTTTATAGATATTCAAGACCAAGAGGGAAGAATCCAATCTTATGTAAGACTAGATGCTATAGGAGAGGAAGAATATAG TGTATTTTCAACATATGATATTGGAGATATAGTTGGAATTGAAGGAGAAATCTTTAAAACTAAAAAAGGTGAAATATCTG TAAAGGCTAAATCTGTAGTATTACTATGTAAATCTTTACAAGTTTTACCAGAAAAATATCATGGATTAAAAGACCAAGAA CTAAGATATAGACAAAGATATGTTGACTTAATAGTAAATCCAGAAGTAAAAAATGCTTTTTTAATTAGAACAAAAGCATT AAAAGCATTAAGAGCATACTTAGATGATAGAGGATTTTTAGAAGTTGAGACTCCAATATTAAATACTATAGCAGGTGGGG CAAATGCTAGACCATTTATAACTAATCATAATACTTTACATATACCAATGTATTTAAGAATAGCAAATGAATTGTATTTA AAAAGACTTATTGTTGGTGGATTTGATAAAGTTTATGAAATGGGAAGAATGTTTAGAAATGAAGGTATGGATTTAAAACA TAATCCTGAATATACTGCAATAGAATTATATCAAGCATATGCAGACTATACTGATATGATGGAAATAACAGAAAATGTTA TTGCACATATGGCTGAAGTTGCTACAGGAAGTATGATAGTTAACTATCAAGGAACAGAAATAAACTTTACACCACCTTGG AAAAGAATGAGTATGGAAGATTGTGTTAAAGAATATTCTGGTGTAGATTTTTCTACTATAAATACAGATGAAGAGGCACT AGAAGTTGCTAGAGAAAAAGGTATAGAGATAAAACCTGGAATGAGAAGAGGAGAAGTAATAAATGCTTTCTTTGAAGAAT TTGGAGAAGATAAATTAATCCAACCAACATTTATAACTCATCATCCAGTTGAAGTATCTCCATTATCTAAGAGAAATGTT GAAGACCCAAGAAGAACTGATAGATTTGAGGCATTTGCTAATAAGTGGGAGTTAGCTAATGCATTTTCTGAACTTAATGA CCCTATTGACCAAAAAGGAAGATTTATAGACCAATTGAGAAAAAGAGAATTAGGTGATGATGAAGCTTTTGAAATGGATG AAGATTTCTTAAAAGCATTAGAGGTAGGTCTACCTCCTACAGGAGGACTAGGAATAGGTATAGATAGAGTAATTATGTTA TTAACTAACTCTCCATCTATAAGAGATGTATTATTATTCCCGACTATGAAACCTATTGATAACAATCCAAATAAAGAAGA AGAAAACTAA Protein sequence : MKNNQQSNEEAQIQEDLSEVLQVRRDKLKKLQESGRDPFKESRYDRTHYSMDIKDNFDSLEGKTTKIAGRIMSKRIQGKA GFIDIQDQEGRIQSYVRLDAIGEEEYSVFSTYDIGDIVGIEGEIFKTKKGEISVKAKSVVLLCKSLQVLPEKYHGLKDQE LRYRQRYVDLIVNPEVKNAFLIRTKALKALRAYLDDRGFLEVETPILNTIAGGANARPFITNHNTLHIPMYLRIANELYL KRLIVGGFDKVYEMGRMFRNEGMDLKHNPEYTAIELYQAYADYTDMMEITENVIAHMAEVATGSMIVNYQGTEINFTPPW KRMSMEDCVKEYSGVDFSTINTDEEALEVAREKGIEIKPGMRRGEVINAFFEEFGEDKLIQPTFITHHPVEVSPLSKRNV EDPRRTDRFEAFANKWELANAFSELNDPIDQKGRFIDQLRKRELGDDEAFEMDEDFLKALEVGLPPTGGLGIGIDRVIML LTNSPSIRDVLLFPTMKPIDNNPNKEEEN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-98 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003219864.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-98 | 47 |
