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Name : CDR20291_2657 (CDR20291_2657) Accession : YP_003219136.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3128333 - 3130246 bp Length : 1914 bp Strand : - Note : - DNA sequence : ATGCGAGAAAGTATAGATTTAGAGAAAGAAAGCTTTTTTAATAGGCTTTTTAAAAAATATAAATTTAGACATTTAACACT ATTAATTCTAGATATTTGTAGCGTACTAGTAGCGTTTCGAATGTCTTTAAGCTTGACAGGTAATTTAAATGCATTTACCA CTAATGATATAATAATTTCAGTGTGTATATATATAGTACTTCATATAGTATCATTTAGATTGTTTAAGTGCTACAACACA TTATGGAGATATGCAGGAGAAGAAGAAATTATATCTATTTTTGTGGCAACTTTAGCTTATTTAATTCCGATTTATATAAT AAATAAATTATTAGGGTTTGATTATCCTATAATGTTTTATGTATTAAATACAATATTTATTATAATGTTTACAAGTGGCG CAAGAATAGCTTATAGAGCTATAAGAATAGTCATGAACAAGACATATTCTAGAGGAAAGGTTTCAAATATCCTTATAATT GGTGCAGGAGATGCAGGAGAAATGGTTATACAGGAACTAAAAAGAAATTCAGAACTTAAAAAAGTAGCAGTGGCTATAAT TGATGATGATAAAGATAAAATTGGAAGAATAATCCATAATGTGAAAATTGTAGGAACAACTTCGGATATAAAAGCTGTGG TAGAAAAGTACAATGTAGATGAGATAATCTTTTCAATAGCAAACATAGAGAAACGTAGAAAAAAAGAGATTATTGATATA TGTAAAAACACTAACTGTAAAATAAAGACAATACCAGGAATTTACGAAATTATAGATGGAAAAGTTGATATAAAACAGAT TAGAGAAGTAGAGATAGAAGACTTGTTGGGTAGAGAGCCTATAAAAACAAATTTAAGAGAGATAAGTAATTACATTGAGG GAAAAGTAATCCTAATAACTGGAGGAGGAGGCTCAATTGGTTCAGAGCTTTGCAGACAGATTGCAGGATTTAATCCTAAA GAGCTTATTATAGTTGATAATTATGAAAATAATGCTTACTCAATACAACAAGAATTACTTAGAAAATATAAAAATAAATT AGATTTAAAGACAGTAATAGCATCAATAAGAGAAGAAAAAAGAATGGATGAAATATTTAATAAATATAAACCAGAAGTGG TATTTCATGCAGCAGCACATAAACATGTTCCTCTTATGGAATCGAGCCCTGGCGAAGCTATAAAGAATAATATATTTGGA ACTTTAAACATAGCTGGCTTGTCTTCAAAATATAGAGCTAAGAAATTTGTCCTTATATCTACAGATAAGGCTGTAAACCC TACTAACATAATGGGAGCTACTAAAAGAGCTGCTGAAATGATTATACAGACTATGAATGCTGAAAGCCAGACTGAATTTG TTGCTGTTAGATTTGGAAATGTGCTTGGTAGTAATGGTAGTGTAATTCCACTTTTTAAGAAGCAAATTGAAGATGGCGGA CCAGTGACAGTTACTCATCCAGATATCATTAGATATTTTATGACAATACCAGAAGCAGTAGGCTTAGTTATACAAGCTGG GGCTATGGCTAAAGGTGGAGAAATATTTGTGCTTGATATGGGAGAACCTGTAAGAATATTGGATTTAGCAAAAAACTTAA TTAAATTCAGTGGATTTGAGCCAGATGTTGATATAAAAATTGAATTTTCTGGTCTTAGACCAGGAGAAAAGTTGTATGAA GAACTACTTATGTCAGAAGAAGGTCTGTTGGATACAGAGCATAAAAAGATTTTTATTGGTAGACCAATAGATGTTGATAG AGAAAAAATAACAAAATACTTAAAACTTTTAAGAGAAATTACTAACAATGAAGAGGTTGAAAAAATAGATGGTATTATGA GGGAATTAGTGCCAACTTATATTAAACCAGAAGATGCTAATATCAAAGAAATTGCAACAACTAGAGAAAAGTAG Protein sequence : MRESIDLEKESFFNRLFKKYKFRHLTLLILDICSVLVAFRMSLSLTGNLNAFTTNDIIISVCIYIVLHIVSFRLFKCYNT LWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIMFYVLNTIFIIMFTSGARIAYRAIRIVMNKTYSRGKVSNILII GAGDAGEMVIQELKRNSELKKVAVAIIDDDKDKIGRIIHNVKIVGTTSDIKAVVEKYNVDEIIFSIANIEKRRKKEIIDI CKNTNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILITGGGGSIGSELCRQIAGFNPK ELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMDEIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFG TLNIAGLSSKYRAKKFVLISTDKAVNPTNIMGATKRAAEMIIQTMNAESQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGG PVTVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPDVDIKIEFSGLRPGEKLYE ELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLKLLREITNNEEVEKIDGIMRELVPTYIKPEDANIKEIATTREK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-89 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-92 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CDR20291_2657 | YP_003219136.1 | capsular polysaccharide biosynthesis protein | VFG1300 | Protein | 2e-92 | 45 |
