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Name : CDR20291_0144 (CDR20291_0144) Accession : YP_003216654.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Unknown Product : RNA-binding protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 188741 - 190891 bp Length : 2151 bp Strand : + Note : - DNA sequence : GTGAATAAATTGGATATAAATCAAATCTTAAAAAAAGAGTTTAATCTTAGAGATGAACAAATAAATAATACATTAAAACT TATTGATGAAGGAAATACAATACCATTTATAGCTAGATATAGAAAAGAAATGACTGGCGAAATGAGTGATGTTACACTAA GAGAATTTTATGAAAAATTAATGTATTTGAGAAATCTTCAAAGTAGAAAAGATGATGTAGTTAGACTAATAGATGAACAA GGGAAATTAACAGATGAAATAACACAAAATATAGAAAAAGCAAAAACATTACAAGAAGTAGAAGATATATATGCTCCATA TAAACAAAAGAAAAGAACTAGAGCAACAATAGCAAAAGAAAAAGGATTAGAAAATTTAGCATTGTCAATACTAGAGAATA ATTTAGATAATATAGAAATAGAGGCAAAGAATTATCTTGATGAAGAGAAAGAAGTTCTTTCTATTGAAGATGCTCTAAAA GGTGCTAGAGATATAATTGCAGAACTAGTCTCAGATGATGCTAAGATTAGAAAGTATATAAGAGAATTAGCTTTAAGAGA AGGTATGATAGTTAGCAAAAGTGCTACTGATGAGAAATCGGTTTATGATATGTATTATGATTATAACGAAGCAGTAAAAA GTATGGCTCCACATAGAGTTTTGGCAATAAACAGAGGAGAAAAAGAAAGCTTCCTAAAGGTTAAGTTAGAAATAAATAAT GATAAAGTTTTAAATTACATAATAAACGAATATGTAAATGATAAAAATTTCAAAAATAAAGAAGAAATCGTAAGTTCAAT AGAAGATTCTTATAAAAGATTAATTTTCCCATCAATAGAAAGAGAAATAAGAAATCATTTAACAGAAATAGCTCAAGAAA GAGCTATAAGTGTATTTGGAAAGAATGTTAAAAGTTTATTGCTTCAACCACCAGTTAAAGACAAAGTAGTTATGGGATTT GACCCTGCATTTAGAACTGGATGTAAAATAGCTGTAGTAGATAAAAATGGTAAACTACTAGATTATACAACAGTATATCC AACAGACCCTCAAAATGATGTAGAGGGAGCAAAGAAAGTTTTAAAAGGATTGATTGAAAAATACGATATAGATATAATTT CAATTGGAAATGGTACTGCATCTAGAGAATCAGAAACTTTTGTATCAGAAATGATAAAAGAAATAGATAGCGAAGTGCAG TATGTGATAGTTAGTGAAGCAGGAGCATCTGTTTATTCAGCATCTGAACTTGCAAATGAGGAACATCCAGATATAAATGT ATCAATAAGAGGAGCTATATCTATAGCTAGAAGATTACAAGACCCATTAGCAGAGCTTGTAAAAATAGACCCTAAAAGTA TTGGTGTTGGTCAATATCAGCATGATTTAAACAAAAAGAGATTAGAAGAAGTGCTAGATGGAGTTGTTGAAGATTCTGTA AATAGTGTTGGAGTAGATTTAAATACCGCATCATACTCCCTACTAGAACATGTTGCAGGAATAAGTAAAGCTATAGCAAA AAATATAATAGCATATAGAGAAGAAAATGGAGATTTTACATCAAGAGCACAATTGAAAAAAGTAAAAAGACTAGGACCTC AAGCATTTACTCAATGTGCTGGATTTATGAGAATCTTAGAGGGTAAAAATCCACTAGATAATACAGGTGTGCATCCTGAA AGTTATGATATATGTAAAAAAATGATTGAGATAATTGGATATTCTTTAGATGATGTAAAGAATAAGAATATAGGTGAAAT AGATGAAAAAATAAAAGAAATTGGCTTGAGGGAATTAAGTGAAAAACTGGAAGTAGGACAAGTTACGTTAAAAGATATCA TAGCTGAAATCAAAAAACCAGGAAGAGACCCAAGAGAAGAAGGTATAAAACCTATACTTAGAACTGATGTCTTAAAAATT GAAGATATACAAGAGGGTATGACTTTAAAAGGTACAATAAGAAATGTTGTAGACTTTGGTGCATTTGTAGATATTGGAAT AAAAAATGACGGATTAGTTCATAAATCAGAAATGAGTAATAGTTTTGTGAAAGACCCTATGAGTATTGTTACAGTAGGTG ATATAGTAGATGTAAAAGTCATTGGAATTGACTTAAACAAAAAAAGAGTTGCCTTATCAATGAAAAAATAG Protein sequence : MNKLDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGEMSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQ GKLTDEITQNIEKAKTLQEVEDIYAPYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALK GARDIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYNEAVKSMAPHRVLAINRGEKESFLKVKLEINN DKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSIEREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGF DPAFRTGCKIAVVDKNGKLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEIDSEVQ YVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDLNKKRLEEVLDGVVEDSV NSVGVDLNTASYSLLEHVAGISKAIAKNIIAYREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPE SYDICKKMIEIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREEGIKPILRTDVLKI EDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKDPMSIVTVGDIVDVKVIGIDLNKKRVALSMKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 1e-133 | 44 |
