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Name : clpB (CDR20291_1933) Accession : YP_003218420.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Virulence Product : chaperone Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2258208 - 2260802 bp Length : 2595 bp Strand : - Note : - DNA sequence : ATGGACGTAGAAAAAATGACTTTAAGAGTTCAAAAAAGTTTAAATGAGGCTTATAACGAAGCAGTAAAAAATCATAACCA ACAAGTAGATGTAATTCATCTTTTCTCAGCACTTATTAATCAAGAGGATGGATTGATACCAAATATAATCGAAAAAATGA ATATATCAATTGATTCTTTGAGAAATACTGTAAACTTTGAAATTGATAAGCTTCCAAAAGTATATGGAGAAGGTGCTGAC TCACAAGGAGTATCAGCTACTAGAAAAATAAATGAGGTGCTTATAAAGGCAGAGAGTATTTCTAAAGAATTTAAAGATTC ATATATAAGTGTAGAGCATGTTATGCTTGCAATGATGGAAACAGAATCAAAATCAGCTGTTGGTAAAATATTAAAACAAT ATAATATAAATAAGAATGACTTTTTAAATATTTTATCACAAGTGAGAGGTAGTCAAAGAGTAGAAACACAAGACCCAGAA GGCACATATGATGCACTTGCTAGATATGGAACAAACTTAGTAGATTTAGCCAAGAAAAATAAATTAGACCCTGTAATTGG GAGAGATGAAGAAATAAGAAGGATTATAAGAATTTTATCAAGAAGAACAAAAAATAATCCTGTATTGATTGGTGAGCCAG GTGTAGGTAAAACTGCAATTGTAGAAGGGTTAGCAGAGAGAATAGTAAGAGGAGATGTCCCAGAAGGTTTAAAAGATAAG ATTGTATTCTCACTTGATATGGGAGCTTTAATTGCTGGTGCAAAATATAGAGGTGAATTTGAAGAAAGATTAAAGGCAGT TTTAAAAGAAGTTCAAAGTTCTGATGGAAAGATTATACTGTTTATAGATGAGATTCATACTATCGTTGGAGCTGGTAAAA CAGAAGGTTCAATGGATGCAGGTAATCTTATTAAACCTATGCTTGCAAGAGGTGAATTGAACTGTATTGGTGCAACTACT TTTGATGAATATAGAAAGTATATAGAAAAAGATAAGGCTCTTGAAAGACGTTTTCAGCCTGTAATTGCAGAAGAACCTAC TGTTGAAGACACAATATCTATACTTAGAGGTTTAAAAGAAAGATTTGAGATACATCATGGAGTAAGAATACATGATAATG CTATTGTAGCAGCAGCAAAACTTTCTCATAGATATATACAAGATAGATTTTTACCAGATAAAGCAATTGATTTAATTGAT GAAGCTGGAGCTATGATTCGTAGTGAAATAGATTCATTGCCAACAGAATTAGATGTTGTTAGAAGAAAGTTATTTACATT AGAAACTGAAAGAGAAGCATTACTTAAAGAAAATGATGATAAAAGCAAATCAAGATTGGATGATATTCAAAAAGAAATAG CAGAGTTAAAATCTAAAAATGATGAAATGACAGCAAAATATGAAAAAGAAAAGAGTCAAATATTAGATATTAAAAACTTA AAGGCTCAATTAGACGAAGCTAAAGGTAAAGCTGAAAAGTATGAAAGAGAATATGATTTCAACAAAGCAGCAGAGGTTAA ATATGGTGAAATACCTAAGTTAGAAGAACAAATAAAGCAGTACGAAGAAAATATGAATGATGGTTCTGAAAATTCTCTTT TAAAAGAAGAAGTTACTGAAGAAGAAATATCTAGCATTGTATCAAAGTGGACAGGTATACCAGTAACTAAACTAGTTGAA GGAGAAAGAGAAAAATTACTTAAACTAGAAGATGAACTTCATAAAAGAGTTATTGGACAAGATGAAGCAGTTACAGCAGT TTCAAATGCAGTAATACGTGCAAGAGCAGGATTAAAAGATGAAAGAAAACCAATTGGTTCATTTATTTTCTTAGGCCCTA CAGGTGTTGGTAAAACTGAACTTGCAAAAACTCTTGCTAGAAATTTATTCGATAGTGACGATAATATAATAAGAATAGAT ATGTCTGAATACATGGAAAAACATGCTGTATCAAGACTAGTTGGACCTCCTCCAGGGTACGTGGGATATGAAGAGGGTGG TCAACTTACAGAAGCAGTTAGACGTGCTCCTTATTCTGTAATACTATTTGATGAGATAGAAAAAGCACATGAGGATGTAT TTAACATGTTCTTACAGATATTAGATGATGGTAGACTTACTGATAATAAAGGTAAGACAGTAGACTTTAAAAATACTCTT ATAATAATGACTTCTAATATAGGAAGTAATTATCTATTAGAAGCAGGAGGAAATATAACAGAGACTACTAACAATTTAGT AATGAATGAAATGAAGCATAGATTTAAACCTGAGTTTTTAAACAGAGTAGATGATATTATAATGTTTAAGCCTTTAGACC AAGAAAATATCAAGAAAATTATAGATATATTTATGAAAGATTTAAAAAATAGATTAAAAGAAAAAGATATTACTATTGAA GTTACAAATTCAGCAAAAGATGTTATGGTGAGAGAAGGATATGACCCTGTATATGGAGCAAGACCTCTTAAGAGATATAT AGGAAATACATTAGAAACTATAATTGCAAAGAAACTTATTGCTGGAGATGTGTATAATGGATGTACTATAGTTATAGATG GAAAAGATGAAAATATTGAAGTTTTAGTTAAATAA Protein sequence : MDVEKMTLRVQKSLNEAYNEAVKNHNQQVDVIHLFSALINQEDGLIPNIIEKMNISIDSLRNTVNFEIDKLPKVYGEGAD SQGVSATRKINEVLIKAESISKEFKDSYISVEHVMLAMMETESKSAVGKILKQYNINKNDFLNILSQVRGSQRVETQDPE GTYDALARYGTNLVDLAKKNKLDPVIGRDEEIRRIIRILSRRTKNNPVLIGEPGVGKTAIVEGLAERIVRGDVPEGLKDK IVFSLDMGALIAGAKYRGEFEERLKAVLKEVQSSDGKIILFIDEIHTIVGAGKTEGSMDAGNLIKPMLARGELNCIGATT FDEYRKYIEKDKALERRFQPVIAEEPTVEDTISILRGLKERFEIHHGVRIHDNAIVAAAKLSHRYIQDRFLPDKAIDLID EAGAMIRSEIDSLPTELDVVRRKLFTLETEREALLKENDDKSKSRLDDIQKEIAELKSKNDEMTAKYEKEKSQILDIKNL KAQLDEAKGKAEKYEREYDFNKAAEVKYGEIPKLEEQIKQYEENMNDGSENSLLKEEVTEEEISSIVSKWTGIPVTKLVE GEREKLLKLEDELHKRVIGQDEAVTAVSNAVIRARAGLKDERKPIGSFIFLGPTGVGKTELAKTLARNLFDSDDNIIRID MSEYMEKHAVSRLVGPPPGYVGYEEGGQLTEAVRRAPYSVILFDEIEKAHEDVFNMFLQILDDGRLTDNKGKTVDFKNTL IIMTSNIGSNYLLEAGGNITETTNNLVMNEMKHRFKPEFLNRVDDIIMFKPLDQENIKKIIDIFMKDLKNRLKEKDITIE VTNSAKDVMVREGYDPVYGARPLKRYIGNTLETIIAKKLIAGDVYNGCTIVIDGKDENIEVLVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-89 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_003218420.1 | chaperone | VFG2076 | Protein | 8e-86 | 41 |
