Gene Information

Name : CDR20291_1884 (CDR20291_1884)
Accession : YP_003218371.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2199316 - 2199981 bp
Length : 666 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTATTTTACAAGTAATTAATTTAAAGAAATATTATGGACAAAGTTCAAACATTACAAAAGCTCTTGATGGTGTAAC
TCTATCTATTGAAAAAGGCGAATTTATTTCTATTGTAGGTACATCTGGTAGTGGCAAATCCACATTATTAAATATGATGG
GAGGATTAGATAATCCTACATCTGGAAAGGTTATTATAAAGGGTAAGGAATTATCTACTATGACTGATGAACAGCTTACA
ATCTTTAGACGCAGAAATATAGGTTTTATATTTCAAAATTATAATCTTGTTCCTTTACTTAATGTATATGAAAATATTAT
CTTACCAATAGGATTGGATGGAGAGACCATAGATAAGGATTTTATAAATGAAATTATAAATATGCTTTCTCTTGAAGAAA
AATTATATGATATGCCAAGTAATCTTTCTGGTGGTCAACAGCAACGTGTTGCTATAGCTAGAGCACTTGTAACAAAACCA
GCTATTATACTAGCTGATGAACCCACAGGTAGCCTTGATAGTAGAACTAGTTCAGATGTACTGAGTTTACTTAAAGTGAC
AAGTAAAAAATTCAACCAAACAATTGTAATGATTACACACAATAATGAAATTGCACAACTAACTGATAGAATTATTCGTA
TTGAAGATGGAAAAATTGTTAACTAG

Protein sequence : 
MSILQVINLKKYYGQSSNITKALDGVTLSIEKGEFISIVGTSGSGKSTLLNMMGGLDNPTSGKVIIKGKELSTMTDEQLT
IFRRRNIGFIFQNYNLVPLLNVYENIILPIGLDGETIDKDFINEIINMLSLEEKLYDMPSNLSGGQQQRVAIARALVTKP
AIILADEPTGSLDSRTSSDVLSLLKVTSKKFNQTIVMITHNNEIAQLTDRIIRIEDGKIVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-36 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-37 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-37 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-37 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_1884 YP_003218371.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-84 77
CDR20291_1884 YP_003218371.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-61 58
CDR20291_1884 YP_003218371.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-38 45