Gene Information

Name : CDR20291_1878 (CDR20291_1878)
Accession : YP_003218365.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2193699 - 2194385 bp
Length : 687 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTATATTAGTGACGAATAATTTAGTGAAACACTATGGAAAAGGTGAGACTAAAGTAAAAGCCTTAAATGGAGTAAG
TATAGAAATTGAACGAGATACATTTACTGCTATAGTTGGAACTTCTGGTTCTGGAAAAAGCACATTGTTAAATATTATAG
GTGGATTAGATAATCCAACCTCAGGTGATGTAATAATTAAAGGAAAGAACATATCTAAAATAGGAAAAAAAGATTTGACA
GTATTTAGAAGAAGAAATATAGGATTTATATTTCAAAACTACAGTTTAATGCCCGTATTAAACACTTATGATAATATAGC
TCTTCCTGTTACATTAGATAAAGGAAACCATATAGACCATGAATATATTGAAATGCTGATGAAGACATTGGGAATTTGGG
ATAAGCGTTTAAAATTTCCAAGCGAACTATCTGGTGGTCAACAACAGAGGGTAGCAATTGCTAGAGCTTTGGCAAATAAA
CCTGCACTTATATTAGCAGATGAACCAACAGGAAATCTCGATAGTAAAACTACAATGGAAGTGGTATGTTTATTAAAAGA
AAGTAGTGCAAAATTCCATCAAACGATACTTATGGTAACACACAATGAAAATATAGCACAAGTATGCGACTCAATTATCC
ATATTGAAGATGGAGTTGTGGTGAATACTGGTGGTGAAGTACTATGA

Protein sequence : 
MSILVTNNLVKHYGKGETKVKALNGVSIEIERDTFTAIVGTSGSGKSTLLNIIGGLDNPTSGDVIIKGKNISKIGKKDLT
VFRRRNIGFIFQNYSLMPVLNTYDNIALPVTLDKGNHIDHEYIEMLMKTLGIWDKRLKFPSELSGGQQQRVAIARALANK
PALILADEPTGNLDSKTTMEVVCLLKESSAKFHQTILMVTHNENIAQVCDSIIHIEDGVVVNTGGEVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 9e-33 42
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 1e-29 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_1878 YP_003218365.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 5e-59 62
CDR20291_1878 YP_003218365.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-52 54
CDR20291_1878 YP_003218365.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-33 42