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Name : CDR20291_1790 (CDR20291_1790) Accession : YP_003218280.1 Strain : Clostridium difficile R20291 Genome accession: NC_013316 Putative virulence/resistance : Virulence Product : conjugal transfer protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 2089315 - 2091708 bp Length : 2394 bp Strand : + Note : - DNA sequence : ATGCAAAACGAAAAGGCATTGAGAAGTCAAAAGCGGGACTTAAAGAAAAGTAATTGCAAGTCAAAAAAAGATAAGGGAGG AATCCTTGACCTTATCTTTAAGAAAGAACCGAAAAGATATACGGTAGAAGATACCATTCCCTATCTAAGGCTTTTAAAAA GCGGAATATGCCAGCTTGATGAAAAGCACTTCAGTAAAAGTATAGCCTTTCAGGACATTAACTATCAGCTTGCCTTAGAT GAAGATAGGGACTTGATTTTTAATCAATTTGCAAACTTCCTAAACTCTTTTGATCCAAGTATCAGCATTGAGTTTTCATA TATCAATCAGCTCGGACGAAACGAAGAAATGAAGTCGGCAATTCAGATACCGGATAAAAAGGACGGTTTCGACGATATAC GCTTTGAATTTAGAGAGATGCTTAAAAGCCAGATTGTAAAGGGAAATAACGGATTGAAAAAATCAAAGTATGTAACCTTT ACAGTGGAAGCGGATAATTTAGAACAGGCAACATCAAAACTTGAAAGACTGGAGATAGATATATTATCGAGTCTTAAAAG TATGGGAGTAAGAGCAGAAAGCCTAAACGGAGAAGAAAGGCTAAAGATACTTCATGATGTTTTAAATCCAAATAAAACAT TTAAATTTTCCTACAAAGACCTAAAGAAAAGGGAAAGCACAAAGACATATATTGTGCCTGATGAGTTTAACTTTACACCG AGTAGATACTTTAAGTTCGGCAAATTCATCGGAGCAACAAGTCATTTTCAAATCCTTGCCAGTGAGCTTTCAGATAGGAT GTTATCCGAGTTTTTGGATATTGACGATAACATCAATATTTCCTTTCATATTAGGGCAATCGACCAATCGGAAGCCATTA AGATGGTAAAACGAAAAAACACTGATATTGATAAGATGAAAATTGAGGAAAATAAGAAGGCGGTAAGAAGCGGTTATGAT ATGGACATTCTTCCATCGGACTTAATTACCTATGGTGAGGATGTAAAGAGCCTCTTAAAAGACTTGCAGACAAGAGATGA GCGAATGTTTGTGGTAAGTATCGTCTTTATGAACTTTGCAAGGACAGTGCAAAAGCTCGATAACACAATTGCTCAAATAA GCTCCATTGCAAATAAGCATAACTGTAAGCTGAAAAGACTTGACCATTCTCAGGAACAAGGTTTAGTGAGCGTGCTGCCT CTTGGTGTAAATAAGATTGAAATAGATAGAGGATTGACAAGCTCATCAACGGCAGTATTTATGCCATTTACCACAGAGGA GCTTTTTATCAATTCAAGTAATAGTCTTTACTACGGACTAAATGCCCTAAGCCATAACCTGATTATGGCAGATAGAAAGA AATTAAAGAACCCAAACGGTCTAATCCTCGGAACTCCGGGCAGCGGTAAGTCCTTTAGTGCCAAAAGAGAAATGGCAAAT GCGATTTTAGTAACAGATGATGATGTGATTATCTGCGATCCGGAAGGAGAGTATGGAAACCTCGTAAGGCAGTTTAAGGG AGAAGTCATTAAGGTCAGCAGTAAGTCGAAGGATTACCTGAATCCTCTTGATATAAACATGAACTACGGTGATGGGGATG CACCGCTGAAAGACAAGGCAAACTTTATCATGAGTATGCTTGAGCTTGTAGTAGGCGGTAGTGGTCTTACAGCAGAAGAA AAGTCCGTTATAGATAGGTGCCTTCCTAAAATCTATGAAAAGTATTTTGAACATCCTACTCCTGACAATATGCCGATACT TCAAGACCTATACGATATGTTAAAAGGGCAGGAAGAAAAGGTCGGTAAGAAGCTGGCAACAGAGATGGAAATCTATGTAT CGGGGTCTCTCAATGTCTTTAATCACAGGTCAAATGTGGATTTAAATAAGAAGCTCCTTTGTTTTGATATTAAGGAGCTT GGAAGTCAATTAAAGAAAATCGGTATGCTTGTTATTCAGGATCAGGTGTGGAATAAGGTGTCACAAAACAGAGGAAACAA GGCTACAAGGTACTATATCGACGAGTTCCATTTGCTTTTAAAAGATGAGCAGACAGCATCCTATTCCGTAGAGATTTGGA AAAGATTTCGTAAATGGGGAGGTATTCCAACAGGTATTACGCAGAATGTCAAAGACCTACTTATGAGTAAGGAGATAGAA AATATCTTTGACAATACAGACTTTGTCTTAATGCTTAATCAAGCATCAGGAGATAGGGAGATACTTGCAAGAAAACTTAA AATCTCACTTCCACAGCTCAGATATGTTACTAATTCAAATGAAGGTGAGGGACTCTTATTCTTTGGAAATACCATTGTGC CTTTCATTGATAAGTTTCCGAAAGATACAATTTTATATCAGAAGATGACTACCAAGCCGGAAGAAGTGAGGTAG Protein sequence : MQNEKALRSQKRDLKKSNCKSKKDKGGILDLIFKKEPKRYTVEDTIPYLRLLKSGICQLDEKHFSKSIAFQDINYQLALD EDRDLIFNQFANFLNSFDPSISIEFSYINQLGRNEEMKSAIQIPDKKDGFDDIRFEFREMLKSQIVKGNNGLKKSKYVTF TVEADNLEQATSKLERLEIDILSSLKSMGVRAESLNGEERLKILHDVLNPNKTFKFSYKDLKKRESTKTYIVPDEFNFTP SRYFKFGKFIGATSHFQILASELSDRMLSEFLDIDDNINISFHIRAIDQSEAIKMVKRKNTDIDKMKIEENKKAVRSGYD MDILPSDLITYGEDVKSLLKDLQTRDERMFVVSIVFMNFARTVQKLDNTIAQISSIANKHNCKLKRLDHSQEQGLVSVLP LGVNKIEIDRGLTSSSTAVFMPFTTEELFINSSNSLYYGLNALSHNLIMADRKKLKNPNGLILGTPGSGKSFSAKREMAN AILVTDDDVIICDPEGEYGNLVRQFKGEVIKVSSKSKDYLNPLDINMNYGDGDAPLKDKANFIMSMLELVVGGSGLTAEE KSVIDRCLPKIYEKYFEHPTPDNMPILQDLYDMLKGQEEKVGKKLATEMEIYVSGSLNVFNHRSNVDLNKKLLCFDIKEL GSQLKKIGMLVIQDQVWNKVSQNRGNKATRYYIDEFHLLLKDEQTASYSVEIWKRFRKWGGIPTGITQNVKDLLMSKEIE NIFDNTDFVLMLNQASGDREILARKLKISLPQLRYVTNSNEGEGLLFFGNTIVPFIDKFPKDTILYQKMTTKPEEVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2320 | NP_815976.1 | traE protein | Not tested | Not named | Protein | 0.0 | 59 |
| EFAU085_00716 | YP_008394240.1 | Type IV secretory pathway, VirB4 component | Virulence | Not named | Protein | 0.0 | 52 |
