Gene Information

Name : CDR20291_1568 (CDR20291_1568)
Accession : YP_003218064.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Resistance
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1857131 - 1857856 bp
Length : 726 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAATCGTGTTTTAATAATAGATGATGAAGTAGAAATATTGAAGCTTTTAGAAACTGTCCTAAAAAAAGAGGGCCT
TAATAATATATATACTGCAAAAACTAAAAAAGAAGGATTAGAATTATTTAAAAGTATTAATCCTGATTTGATTGTATTGG
ATATTATGTTACCAGATGGCGAAGGTTATGATATTTGTAAAGAAATAAGAAAAACCTCCAATTCTCCAATAATATTTTTA
TCAGCTAAAACCGAAGAATTAGATAAGTTACTTGGACTAGCGATTGGAGGAGATGATTATGTTACAAAACCTTTTAGCCC
TAAGGAAGTGGCTTTTAGAGTTAAAGCGCATTTGAGAAGATTAAGTTATTTTAGTGATGTTCAAAACGAAAGTAAAAATC
TAAATAAGAATGAAGAAAAAATTATATCATTTGGCCCATATATATTAAATGAAAGTAGGGCAGAACTTATAAAAGATGGA
AAATCTATAGGACTGTCTGCAAAGGAACTAAAAATCCTATCTTTATTTGCACATAATCAAAATCAAATTATAAGTAAAGA
AAAACTATGGGATAAAGTGTGGGGAGAAGATTATGTTGGATTTGACAATACTATAATGGTTCATATAAGAAAAATTAGGG
AAAAATTAGAGGATAATCCTTCAAAGCCTGAATATATTCTGACAATAAAAGGTCTTGGATATAAATTAGCAGTAAAGGAA
GATTAG

Protein sequence : 
MENRVLIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIMLPDGEGYDICKEIRKTSNSPIIFL
SAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLSYFSDVQNESKNLNKNEEKIISFGPYILNESRAELIKDG
KSIGLSAKELKILSLFAHNQNQIISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKLAVKE
D

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sboR YP_006309915.1 SboR Not tested FWisland_1 Protein 6e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDR20291_1568 YP_003218064.1 two-component response regulator NC_012469.1.7685629. Protein 8e-36 42
CDR20291_1568 YP_003218064.1 two-component response regulator NC_005054.2598277.p0 Protein 3e-36 41
CDR20291_1568 YP_003218064.1 two-component response regulator NC_014475.1.orf0.gen Protein 3e-36 41
CDR20291_1568 YP_003218064.1 two-component response regulator AM180355.1.gene1830. Protein 2e-37 41
CDR20291_1568 YP_003218064.1 two-component response regulator NC_012469.1.7686381. Protein 2e-35 41
CDR20291_1568 YP_003218064.1 two-component response regulator FJ349556.1.orf0.gene Protein 3e-37 41