Gene Information

Name : CDR20291_1426 (CDR20291_1426)
Accession : YP_003217923.1
Strain : Clostridium difficile R20291
Genome accession: NC_013316
Putative virulence/resistance : Unknown
Product : snf2-related protein
Function : -
COG functional category : K : Transcription
COG ID : COG0553
EC number : -
Position : 1686851 - 1688221 bp
Length : 1371 bp
Strand : +
Note : subname: full=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

DNA sequence :
ATGGAATTTAAACCACATCCATACCAAGAATACACAATTAGAAAAACTATAGATAATAATAATATAGGTTTACTATTAGA
TATGGGATTAGGTAAAACAGTCTGTACTCTAACAGCTATAAGTGAATTAATGTATGATTACTTTGATATATCAAAAGTTT
TAGTTATAGCACCTTTAAGAGTTGCAAGAGATACCTGGAGTAGTGAAGTAAAAAAATGGGAACATCTAAAGCATCTAAAA
GTATCTAAAGTTCTTGGTAGTAAATTAGATAGAGTGAGAGCTTTAAGTACAGACTCAGATATTTATATAATAAATAGAGA
AATGGTACCCTGGATAGTGGATTTTTATAAAAGAAAATGGCCATTTGATATGGTTGTGATAGATGAACTTAGTTCTTTTA
AATCAAATAAAGCACAACGATTTAAAAGTTTAAAGAAAGTATTGCCTTTAACTAAAAGAGTAGTTGGGCTTACTGGTACA
CCAACACCAAATAGTTTAATAGACTTATGGGCACAGATGTACTTACTTGATAGAGGTGAAAGACTAGGTAAAACTATTAC
AGGATATAAAGAACGATACTTTGAGCCAGGACAAAAAAATTATCAAACAGGAGCTATATATAATTGGCAACCTAAAAATG
GAGCAGAAAATGCAATACATAATAAAATAAAAGATATTTGTATAAGCTTAAAAGCAGAAGATTATTTGAATATGCCTAGA
AAAATAGATAATAAAATTGAAATACACCTTGATAGTAAAATACTTAAATATTACAAAGAATTAGAAAAAGAGAAGATATT
AGAATTAGATAGAGATATAATAACAGCTTCATCAGCAGCTGTAGCAGCAAATAAACTTTTACAATTAGCTAATGGAGCAA
TTTATGATAATGATAAAAATGTAAAGGAACTCCATAGAGAAAAATTAGAAGCTTTAAAAGAAATTATAGATGTTTCAAAT
GGTAAGCCTATTATAGTTTTTTATAACTATAAACATGATTATAATCGTTTAATGAAAGAGTTTAAGAGTTTGAAACCAAG
AACAATAGAAAACTCAAAAGATATATATGATTGGAATAATGGAAGAATACAATTATTACTTTGTCATCCAGCAAGTACAG
GACATGGACTTAATTTACAATCAGGTGGAAGTATAATTGTTTGGTTTGGATTAACTTGGAGCTTAGAACTGTATCAACAA
GCTAATGCAAGGCTTTATAGACAGGGTCAAAGGGAAACTGTTATTATCCATCATCTAATCTGTAAAGGTACAATAGATGA
ACAAGTAATGGAAGCTATAGAGAATAAGGATAAAGGGCAAAGTGCATTACTTGAAGCAGTAAAAGCAAAATTAAAAGAAT
ATAGGGAGTGA

Protein sequence :
MEFKPHPYQEYTIRKTIDNNNIGLLLDMGLGKTVCTLTAISELMYDYFDISKVLVIAPLRVARDTWSSEVKKWEHLKHLK
VSKVLGSKLDRVRALSTDSDIYIINREMVPWIVDFYKRKWPFDMVVIDELSSFKSNKAQRFKSLKKVLPLTKRVVGLTGT
PTPNSLIDLWAQMYLLDRGERLGKTITGYKERYFEPGQKNYQTGAIYNWQPKNGAENAIHNKIKDICISLKAEDYLNMPR
KIDNKIEIHLDSKILKYYKELEKEKILELDRDIITASSAAVAANKLLQLANGAIYDNDKNVKELHREKLEALKEIIDVSN
GKPIIVFYNYKHDYNRLMKEFKSLKPRTIENSKDIYDWNNGRIQLLLCHPASTGHGLNLQSGGSIIVWFGLTWSLELYQQ
ANARLYRQGQRETVIIHHLICKGTIDEQVMEAIENKDKGQSALLEAVKAKLKEYRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH1779 YP_253694.1 hypothetical protein Not tested ¥ÕSh1 Protein 3e-117 55
SAOV_0314 YP_005735831.1 putative DNA helicase Not tested ¥ÕSa1 Protein 2e-118 55
SEQ_2070 YP_002747285.1 SNF2 family phage protein Not tested ¥ÕSeq4 Protein 9e-107 54
SAUSA300_1408 YP_494105.1 phage helicase Not tested ¥ÕSa2 Protein 5e-109 54
MW1405 NP_646222.1 hypothetical protein Not tested ¥ÕSa2 Protein 2e-118 54